| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0454 |
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| Symbol | |
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| ID | 5745991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 486690 |
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| End bp | 487277 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641295517 |
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| Product | putative conjugal transfer TRAF transmembrane protein |
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| Protein accession | YP_001561485 |
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| Protein GI | 160895903 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGCCG TTTCGACTGT CGGCACCGCG CCGCGTCCTC GCTCACGCCT GCGCGCTCGC
ATCGTGCTCG CGTGCCTGTC TGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG
CATCCGCTGC CGCGCATCAT CTACAACCCG TCCGACAGCG TGGCGGTCGG CTGGTATCGC
GTGGAACCGC TCCACCAGCG TACCGACTCG CTGCACCAGC CTTTGTCCGT TGGCAGCATC
GTCTTGACCA CGTTGCCGGC AGACACCGCC GCGCTGGCCG CGCAGCGCCG CTACCTGCCG
GCGCGCGTGC CGCTGCTCAA GCGCGTGGGC GCCGTCGCGC CGCAAACGGT GTGCGTGTTT
GATGCGCTGG TCTGGATCGA CGGCGTGCCG GTGGCCGCCG TGCTGCCCGC CGACCGGCTG
GGCCGTCCGC TGCCTTCCTG GCGGCAGTGC CGCCAGCTTC GGCCTGGCGA ACTGTTCCTC
TTGAGCGTGA CCAACCCGGC GTCGTTCGAC AGCCGGTATT TCGGGCCGGT CAGCGCATCC
GCCGTGATCG GCGTCGCGCA TCCGATCTGG CTGGAATCCC GCCCATGA
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| Protein sequence | MTAVSTVGTA PRPRSRLRAR IVLACLSACG LAALAWASFV HPLPRIIYNP SDSVAVGWYR
VEPLHQRTDS LHQPLSVGSI VLTTLPADTA ALAAQRRYLP ARVPLLKRVG AVAPQTVCVF
DALVWIDGVP VAAVLPADRL GRPLPSWRQC RQLRPGELFL LSVTNPASFD SRYFGPVSAS
AVIGVAHPIW LESRP
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