| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3173 |
|---|
| Symbol | |
|---|
| ID | 5743260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3874914 |
|---|
| End bp | 3876260 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641294273 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001560267 |
|---|
| Protein GI | 160881299 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000170892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGCG ACAGTAAGAA TCAAGTATCA TTGACTGAGG GCCCCATATG GAAGCAAATT
ATTTTATTTA CGATACCTTT GCTATTAGGT AATGTATTTC AACAGATGTA TAATGCTGCA
GACTCAATTA TAGTAGGTAA TTTTCTTGGT AGTAGCGCAC TAGCAGCAGT AGGTTCTTCC
AGTTCTGTTA TTAATCTATT AGTAAGTGCC TTTATGGGTA TATCAGTTGG AGCAGGAGTC
GTGATATCTA AGTACTATGG TGCAAAGGAT GAGGACGGGG TAGAGCGCGC AGTTCATACA
ATGGTGACTT TCGGAATCAT CGGTAGTATT GTATTAACAA TTCTTGGAAT CGTATTGTCA
CCTTATATTT TAGTTTGGAT GGGTACACCA GATAGCGTTA TGCAAAATTC TGTCTTGTAT
TTTCGAATAT TCTTTGCAGG AATAGCATCT ACAGTTATGT ATAATATCGG AAGCGGAATA
TTTCGCGCGG TTGGAGATTC CAAACGTCCT CTTTATTATC TAATTATTTC TACAATTATA
AATGTTATAT TAGATTTAAT ATTTATCGCC ATCTTTCATT GGGGGATAGC AGGTGCTGCA
ATTGCAACAG TAATTGCACA GACAGTGAGC TGTATTCTTA CTTTTTATAA CTTAATTTCG
GAGACATCTG TATATCAATT AAAGTTAAAA AAATTAAGAA TTCATAAATT TGAATTAAAG
CAAATTATCG GGATAGGATT ACCGGGTGGT CTACAAAATT CTATCGTTTC TCTATCAAAT
GTTATCGTTC AGTCGAATAT CAATTCTTTT GGTGAATTAG CGATTGCAGG TTGTGGAGCC
TATTGGAAAA TAGATGGTTT TGCTTTATTA CCAGCAAGTA GTTTTGCACT GGCAGTGACA
ACATTTGTAA GTCAAAATAT TGGTGCTAAA AAGCACGAAC GTGTAAAAAA AGGAACAATT
TTTTCGTTAT TTGCAGGAAT GGTTACTGCT GAATTAATAG GTGTAGTTAT CTTTATTTTT
GCACCTTATC TAATTGCTCT ATTCAATCGA GATCCAGAGG TGATTGCTTA TGGAAGCGAA
ATGGCACGAA ATATCGTACC AGCTTATTTT CTAGTAGCGC TCTCACACGG AATTGCTGGT
GTTTTACGAG GTGCTGGTAA ATCTGTAGTA CCAATGATTA CAATGATTTG TTTTTGGTGT
ATTTTACGAG TTATTTATAT GACAGTAGCC TTAAGATATG TAAACGATAT TCGTATTGTA
TACTGGGCAT ATCCAATCAC ATGGACATGC AGTGCGATTG TATTATTGAT TTATCTAAGG
AAGGTAAAGT GGATGCCATC GCTTTAA
|
|---|
| Protein sequence | MLSDSKNQVS LTEGPIWKQI ILFTIPLLLG NVFQQMYNAA DSIIVGNFLG SSALAAVGSS
SSVINLLVSA FMGISVGAGV VISKYYGAKD EDGVERAVHT MVTFGIIGSI VLTILGIVLS
PYILVWMGTP DSVMQNSVLY FRIFFAGIAS TVMYNIGSGI FRAVGDSKRP LYYLIISTII
NVILDLIFIA IFHWGIAGAA IATVIAQTVS CILTFYNLIS ETSVYQLKLK KLRIHKFELK
QIIGIGLPGG LQNSIVSLSN VIVQSNINSF GELAIAGCGA YWKIDGFALL PASSFALAVT
TFVSQNIGAK KHERVKKGTI FSLFAGMVTA ELIGVVIFIF APYLIALFNR DPEVIAYGSE
MARNIVPAYF LVALSHGIAG VLRGAGKSVV PMITMICFWC ILRVIYMTVA LRYVNDIRIV
YWAYPITWTC SAIVLLIYLR KVKWMPSL
|
|---|
| |