| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3116 |
|---|
| Symbol | |
|---|
| ID | 5743202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3811948 |
|---|
| End bp | 3813780 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641294216 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001560211 |
|---|
| Protein GI | 160881243 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG GAAAAGAAGT GCCTTATTCT TTGAGAGACA ACTTTCATTA TATTTATGCA
AATATGTGGA AGTATGATAA ATCACTGATT TTCTACGGTT TGGCAGAAAT CATTTTTAAT
GTATTACTTC CGCTTTGCGG GATTATACTT CCTTCTATTG TAGTGGGACT TTTGGAGAAA
AGAGCGGGGG TACCAAAATT CATTCAGATG ATGTTCATAG TATTTTCGGT GTATGGTGCC
ATCTCAGCTG TTCAGGCTTT TCTGTCCAAT AGAAACAGAA ACCAGTATAT TGATATCCGA
ATGAATTTCT TTTCTTTGAT CCTGTTCCAA AGGTGTTTTT CCATAGATTA CAGCCAATTG
GAAAAGGAGT CAGTGAGGGA GGAACTAAAA AAAGCGGGAG ACAGCGTCTA TGGTAACTGG
CATGGTCTGG AGGGTTTTAT GCACCGAAAT GTTCTCCTTC TAACCAATGT ATTAGGGCTT
ATAACCTATG CCGTTGTAAT AGGATGGATT AATCCGGTTA TTCTGCTGCT TTTGCTGGTG
CTTTCAGCAA TTCAGGTAAT GGTATTTCAC CGTGCCAAAC TCTATGAGAA CAAACAAAAG
AACGAAATAT CTAAGATTAA AATTACACAA GGTTATTTAC AGGAGCAGTC CTTTGATTTA
AAGGCAGGTA AGGATATCAG GCTTTATCAG TTAGATAAGC TTATTGGTAG AGTGTACACA
TCAGCAAATA ACAGGTTAAA GAAAATTAAG TCTAAAGTCA GAGGTATCTA TTATGTAAAT
GATGTGGTGG AAATCCTTTT AAAGTTTATT AGGGATGGTT TATGCTACGG GTATTTGATT
TATTTGCTGA TGCATGGTCT ATCTGTATCC GAATTTGTCC TTTATCTTGG TATCGTAAGT
GGAGTGGCAA GTTGGATGAT GAAGATTACA GAGGAGATCT CGGAACTTGG GAGATGCCAT
TATATGATTT GTGATTTTAG AAAATTCTGC GACCTGAAAG ATATCTTTTC CCACAAGGAT
GGGAAGGAGA TAGAGGAAGA GGATATGGCT CTTGATATTG TATTTGACCA TGTTTCCTAC
CAGTATGAAG GCGCATCAAG TTATGTGCTT AAGGATATCA GCTTTCACAT GAATAAGGGG
GATAAATATG CACTGGTAGG AGTAAACGGT GCCGGCAAGA CTACCCTTGT AAAACTGATG
TGCGGTTTCT ATCAGCCGAC AAGTGGCAGA ATACTTATTA ATGGGATAGA TACCAGGGAG
CTTAATATAG AAAGTTATTT TAAGCAAATC GCTGTTATCT TCCAGGATAC TGCTGTTCTG
TCCTTAACAA TAGGAGAGAA CATCTGTGGG GTGCCAGATA GTAAAATTAA TCGAAAAGAC
CTTGATCAAG CGCTGGAACT GGCAGGATTA AGGAAGAAGA TAGAGAGCCT ACCAAAAGGA
ATAAATACTT ACTTAAATAA GGATGTAGAA GAAAGCGGTA TACAGCTCTC AGGCGGCGAG
CTGCAAAAGC TATTGCTTGC AAGGGCTTTA TATAAGAAGG CTAAACTTTT ACTGTTTGAC
GAACCTACTG CGGCTATGGA TGCCATCGCA GAAAGTGAAC TTTATGAGCA GTATCAGAGT
CTACTTCATG AAAGAACCGC TTTGTTTATA TCCCACAGGC TGGCATCTAC CAGGTACTGT
GACAAAATCC TTTTTCTTGA AAAGGGGATG ATTGCAGAAG AGGGAAGCCA TGAAGAACTT
GTAAGGCTTA ACGGAAAGTA TGCAAATATG TTTCAAATCC AGAGTAAATA TTACAAGGAG
GAAGAAGATG AAATTCAAGA AAGTATGGCA TGA
|
|---|
| Protein sequence | MKKGKEVPYS LRDNFHYIYA NMWKYDKSLI FYGLAEIIFN VLLPLCGIIL PSIVVGLLEK
RAGVPKFIQM MFIVFSVYGA ISAVQAFLSN RNRNQYIDIR MNFFSLILFQ RCFSIDYSQL
EKESVREELK KAGDSVYGNW HGLEGFMHRN VLLLTNVLGL ITYAVVIGWI NPVILLLLLV
LSAIQVMVFH RAKLYENKQK NEISKIKITQ GYLQEQSFDL KAGKDIRLYQ LDKLIGRVYT
SANNRLKKIK SKVRGIYYVN DVVEILLKFI RDGLCYGYLI YLLMHGLSVS EFVLYLGIVS
GVASWMMKIT EEISELGRCH YMICDFRKFC DLKDIFSHKD GKEIEEEDMA LDIVFDHVSY
QYEGASSYVL KDISFHMNKG DKYALVGVNG AGKTTLVKLM CGFYQPTSGR ILINGIDTRE
LNIESYFKQI AVIFQDTAVL SLTIGENICG VPDSKINRKD LDQALELAGL RKKIESLPKG
INTYLNKDVE ESGIQLSGGE LQKLLLARAL YKKAKLLLFD EPTAAMDAIA ESELYEQYQS
LLHERTALFI SHRLASTRYC DKILFLEKGM IAEEGSHEEL VRLNGKYANM FQIQSKYYKE
EEDEIQESMA
|
|---|
| |