Gene Cphy_3069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_3069 
Symbol 
ID5743395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp3753565 
End bp3754962 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content34% 
IMG OID641294170 
Productpolysaccharide deacetylase 
Protein accessionYP_001560165 
Protein GI160881197 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAAC CAAAAAATAT ACCAATGAAG TACTATCTAG TGTTGCTTCT TTTTATTCTG 
ACCATTATCA TGATTTCATG TTCTGGGAGA AATGTAAAAA ATTATGATGA GGCTATTTCA
CCGGATTCTA TTTATCAGGA GATAGGAAAT ACTCAAATAA TTAAGGAAGT GAATGAATTA
GCTAAAATAT CGATTTATTA CCCAAAAATT GGACAAGAAG TAATCGATCA AAATATATTA
GAATATGTAA ATTCAATCAT GACGGATTTT GAAAATGAGA TTAAGTTAAA ACAAGAGCAA
AGCAATGTTT CCTTCGACTA TACACCTAGG CTAACGATCC AATATGAAAC TTATGCTTCC
TATCCCAATA TCTGTAGTAT CAAGTTTCAT ATTTTAGAAG GTATGCCATG GGAGGAGAAG
AAGCGAGATT ATATACAAAC ACTATGCTTT CAAGTAGATG AAGGTAAGAG TTTAAAGATA
GATGATATAT TGTCAGTAGC TCATCAACAA GAATTTTATG ACCAAGTGAT AAAGCAATTA
GAAACACAGG AAGTCTATGG TAAGTATTTA GATGAAGATA TGATAGAAAG CATGGTAATG
GATGCTGTTC AAAATGGATT ACAATTTGCA TTAACGAAAG ATAATATGAT TCTATACTTT
CCAAGATATG ATTTACTAAG CGGGTTATCA TTATCACCTA CGACATCAAT AGCAATAGCA
TCTTTATCGG ACAAACTAGG CTTGGATGAA CGAGGAAAGC TATACTCAGG CCGAAAAATA
GATTCAAATA GGCCAATGAT TGCTTTAACT TTTGATGACG GGCCTCATGA TATATATACC
GCAAGAATTT TAGATACCCT TAAGGAATGC GGAGGAAAGG CGACCTTTTT TGTTTTAGGA
AAACGGGTTG AAAGTCATAG CAAAATATTG AAACGTATGT TGAAAGAAGG CAGTGAAATT
GGCAACCATT CTTACTCGCA CCCATTGTTA ACTACATCTA CAACAGATAA GATCAAGAAA
GAAATATCAA GAACGCAAGA TGCTATTTAT CAGTGCACAG GATTTACGCC AAAGCTTGTA
AGGCCTACTT ATGGTGCAGT AAACCAAACC GTACGAGCAG CAATTCGTTA TCCAATGATA
GAATGGTCAG TAGATACCGA AGACTGGAAA TCTCGTAATA TTGATATGAT AGTAAAAGAA
GCCATGAAAG GTGCCAAAGA TGGAGCGATT ATATTGATGC ATGATATTTA TCCAACGACA
GCAACAGCAG CAGAGAAGGT GATACAAAAA TTAACAAAAG AAGGCTATCA ATTAGTAACT
ATATCAGAAT TATTTGAATA TCGTGGCATT GGTTTGAGCG CAGGAAGAGA ATATTTTTCA
TCGAAATATA ACAGATAA
 
Protein sequence
MIKPKNIPMK YYLVLLLFIL TIIMISCSGR NVKNYDEAIS PDSIYQEIGN TQIIKEVNEL 
AKISIYYPKI GQEVIDQNIL EYVNSIMTDF ENEIKLKQEQ SNVSFDYTPR LTIQYETYAS
YPNICSIKFH ILEGMPWEEK KRDYIQTLCF QVDEGKSLKI DDILSVAHQQ EFYDQVIKQL
ETQEVYGKYL DEDMIESMVM DAVQNGLQFA LTKDNMILYF PRYDLLSGLS LSPTTSIAIA
SLSDKLGLDE RGKLYSGRKI DSNRPMIALT FDDGPHDIYT ARILDTLKEC GGKATFFVLG
KRVESHSKIL KRMLKEGSEI GNHSYSHPLL TTSTTDKIKK EISRTQDAIY QCTGFTPKLV
RPTYGAVNQT VRAAIRYPMI EWSVDTEDWK SRNIDMIVKE AMKGAKDGAI ILMHDIYPTT
ATAAEKVIQK LTKEGYQLVT ISELFEYRGI GLSAGREYFS SKYNR