| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3040 |
|---|
| Symbol | |
|---|
| ID | 5743366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3717167 |
|---|
| End bp | 3718072 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641294141 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001560136 |
|---|
| Protein GI | 160881168 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG CCAATCTGGA ATACTATAAA ATATTTTACT ATGTTGCCAA AGAAGGTAGT
ATTTCTTTAG CTGCCAAACG GGTATGCATC TCGCAGCCTG CAGTCAGTCA GGCAATAAAG
CAATTAGAAT CTGTTCTTAA CTGTCAACTT TTTATTCGAG TGGCAAAAGG AATGCGCTTA
ACCAAAGAAG GAGAGGTTTT GTACCAGTGC GTTAGAGAAG GGTATGAACT TATCGTAAAA
GGAGAAGAGC GTTTAGAACG GATGCTAAAT CTTGAATCTG GGGAAATTAG AATTGGAGCT
TCGGATATGA CGTTACAATA CTATTTGCTA CCGTATCTAG AAGAATTTCA TATCCAATAC
CCTAAGATAA AGGTGACTGT AACCAACGGT CCTACCCCAG AGACACTTGC ACTCCTAAAG
GATGGGCAAA TAGATTTTGG TATTGTAAGT GAGCCATTTT CTTTATCAGA GGATTATAGT
GTATTTAAGG TCAAAGAAAT CAAAGATATC TTTGTGGCTG GAAAACGATT CGATTATCTA
CGGGATCAAA CCATGGATTA TGAAGAGCTT GCAGGTCTAC CTGTTATATG CTTAGAGAAT
GATACTAGTA CGAGACGATA TGTAGATGAG TACTTAAGTT CCCATGGCGT TGTTTTATCT
CCGGAGTTTG AATTAGCAAC GAGTGATATG ATAGTGCAGT TTGCTAAAAG AAGTCTAGGA
ATTGGATTAG TGGTGGAGGA TTTTGCAACG GAATTAATGA AACAAGGTGA ATTATTTGAG
GTGAGATTAA AGACACATAT TCCAAGCAGA CATTTTTGTG TCGTTGAAAA TCAAAGGTTT
GCATTATCCA CTGCTTCAAG GAAGCTCCTT GCATTACTAA AGGAAAGTCA GTATAATGAA
ATATAG
|
|---|
| Protein sequence | MAKANLEYYK IFYYVAKEGS ISLAAKRVCI SQPAVSQAIK QLESVLNCQL FIRVAKGMRL
TKEGEVLYQC VREGYELIVK GEERLERMLN LESGEIRIGA SDMTLQYYLL PYLEEFHIQY
PKIKVTVTNG PTPETLALLK DGQIDFGIVS EPFSLSEDYS VFKVKEIKDI FVAGKRFDYL
RDQTMDYEEL AGLPVICLEN DTSTRRYVDE YLSSHGVVLS PEFELATSDM IVQFAKRSLG
IGLVVEDFAT ELMKQGELFE VRLKTHIPSR HFCVVENQRF ALSTASRKLL ALLKESQYNE
I
|
|---|
| |