| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2525 |
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| Symbol | |
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| ID | 5742596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 3095595 |
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| End bp | 3096365 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 641293615 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001559625 |
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| Protein GI | 160880657 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.721385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACTACG GACTAATTGG AGAAAAACTG GGACATAGCT ATTCTAAAAT AATTCATGAA
CAGATAACAG ATTATCAATA TGAGATACAC CCTTTAAGTA AGGAAGAGTT TCCTCTCTTT
ATGAAAGAAA AGAATTTTAA GGCAATCAAT GTCACAATTC CGTATAAACG AGATGTGATT
CCTTATCTTA ATGAAATTGA TGAAAAAGCA AAAAAAATCG GTGCAGTTAA CACCATTGTC
AATGACAACG GGAAACTCAC CGGATATAAT ACAGACTACG ATGGTTTTTA CTATACTCTA
GTGGAAAACC AGATTGAAGT AAAAGGAAAA AAGGTCTTGG TTTTAGGAAA TGGCGGTGCT
GCTCTCGCAG TACTTGCTGT ATTAAAAGCC TTAGAGGTAG GACAAATTCT AATTGTGAAA
TATAAAGAAG AAGATGGCTG TATTACTTAT GAGGAAGCAA AAGAAAAGCA TTTTGATGCA
TCAATTATAA TCAATACTAC TCCTGTTGGA ATGTATCCGA ATTGTAATGA TAGCCCGATT
GATCTAACAC CATATCAAAG TTTAGAAGCG GTTGTAGATG TAATTTATAA TCCACTTACA
ACCAAACTAC TTGCTCAAGC GATGGAACGA CAGATAAAAG CTGTCAACGG TCTTGCAATG
CTTGTTGCTC AGGCAAAATA TGCTGTAGAA CATTTTAAGA ATTGTAAACT CAGTGATGAA
TTGATTGGTC CGATTTATTC TAAGGTGGAA GCTTTGTTAA AAAATAAGTG A
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| Protein sequence | MDYGLIGEKL GHSYSKIIHE QITDYQYEIH PLSKEEFPLF MKEKNFKAIN VTIPYKRDVI
PYLNEIDEKA KKIGAVNTIV NDNGKLTGYN TDYDGFYYTL VENQIEVKGK KVLVLGNGGA
ALAVLAVLKA LEVGQILIVK YKEEDGCITY EEAKEKHFDA SIIINTTPVG MYPNCNDSPI
DLTPYQSLEA VVDVIYNPLT TKLLAQAMER QIKAVNGLAM LVAQAKYAVE HFKNCKLSDE
LIGPIYSKVE ALLKNK
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