Gene Cphy_1683 details

Gene Information

• Locus tag: Cphy_1683
• ID: 5741514
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2065548
• End bp: 2066213
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 641292783
• Product: AraC family transcriptional regulator
• Protein accession: YP_001558794
• Protein GI: 160879826
• COG category: [K] Transcription
• COG ID: [COG2207] AraC-type DNA-binding domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGAGA CTGAAACTAT TATGTCGGTA CAACGCATGC AAGAATATAT TGATGTAAAT 
ATTTTAAGAA AAATCACAAT AAAAGAATTA GCTGTTGCAG CAGGATATTC ACCATGGCAT 
GCTGCAAGAC TGTTCAAAGA AGTTACCGGT AAGGCACCAT TTGAGTACAT TCGTGCATTA 
AGACTTACTA AAGCGGCATT AATACAACGT GATAGTAATG AAAAAATAAT AGATGTAGCG 
ATGGATTTTG TGTTTGATTC TCACGAGGGA TTTACGAGAG CTTTCTCAAA GCAATTTGGT 
ATGACACCAA GCAAATATAG TCAATACACA CCGCCAATAA AATTGTTTAT GCCTCAGAAA 
GTTTTCGATA CCTACCGAGC ATTTCATAAA GGAGGAAAAA TGATGAGTGA AGCAAATATT 
ACTAAATCTA TATTTGTTCA GGTGATTGAG CGTCCTTCAC GAAAGGTTTT GCTAAAGAGA 
GGAAAAAATG CAATCGACTA TTTTGAATAC TGTGAGGAGG TAGGTTGTGA TGTGTGGGCA 
GTTCTTTCAA GTGTAAAAGA AGCGATGTAT GAGCCAATTG GAATGTGGCT TCCAAGGCAT 
CTTAAGGGCA CCAGAAGATG CACCAAGATT TCAGCTTGCA CCAATGGGAT ACAGAGGGTA 
TATTGA 

 

Protein sequence

MDETETIMSV QRMQEYIDVN ILRKITIKEL AVAAGYSPWH AARLFKEVTG KAPFEYIRAL 
RLTKAALIQR DSNEKIIDVA MDFVFDSHEG FTRAFSKQFG MTPSKYSQYT PPIKLFMPQK 
VFDTYRAFHK GGKMMSEANI TKSIFVQVIE RPSRKVLLKR GKNAIDYFEY CEEVGCDVWA 
VLSSVKEAMY EPIGMWLPRH LKGTRRCTKI SACTNGIQRV Y