Gene Cphy_1624 details

Gene Information

• Locus tag: Cphy_1624
• ID: 5744445
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2002633
• End bp: 2003304
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 641292724
• Product: ABC transporter related
• Protein accession: YP_001558735
• Protein GI: 160879767
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGTAT TGACACTAAA CAATGTGACT TACAGATATG AAGGAACGAA AAAGAATGTA 
CTGAAAGGCG TAGATGCTTC CTTTGAAGCT GGAAATGTCT ATACCATAGT CGGAAAATCC 
GGTTCTGGCA AGTCCACTTT TCTTTCTTTG ATTGCTGGAC TGGATGTTTG TACGGAAGGG 
CAAATTTTAC ACGGTGAGCA GGAATTGAAA AAGCTTGATC GAGACGAATA CCGCGCCAAA 
GGTATTGGAG TAGTGTTCCA GAGTTTTAAT CTCTTAACAA ATGCATCTGC CGTTGAAAAC 
ATTGTGCTAT CTATGAATAT TAGTGGAAGT AAAGAAGCCA ATAAAAAAAC ATTTGCCTAC 
TCCTTACTTG AAAAGGTAGG TATTGACCGT GAAACAGCGG ACAGAAAAAT CCTCAAACTC 
TCCGGTGGAG AACAGCAGCG TGTAGGTATT GCAAGAGCAA TCTCACACGA TCCTGACATT 
GTCATTGCTG ACGAGCCAAC AGGTAATCTT GATAAAGATA CCGAGGAGGA AATCCTAAAA 
ATCTTTACCT CCCTTGCTCA TAATGAGGGT AAATGTGTTA TTCTCGTCAC CCACTCTAAA 
AAAGTAACTA CCATAGCTGA TATGATTTAT GGCATGAGTG ATGGTAAGAT GATAGAGATG 
AAGCAAAAAT AA 

 

Protein sequence

MNVLTLNNVT YRYEGTKKNV LKGVDASFEA GNVYTIVGKS GSGKSTFLSL IAGLDVCTEG 
QILHGEQELK KLDRDEYRAK GIGVVFQSFN LLTNASAVEN IVLSMNISGS KEANKKTFAY 
SLLEKVGIDR ETADRKILKL SGGEQQRVGI ARAISHDPDI VIADEPTGNL DKDTEEEILK 
IFTSLAHNEG KCVILVTHSK KVTTIADMIY GMSDGKMIEM KQK