| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1561 |
|---|
| Symbol | |
|---|
| ID | 5744383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1918294 |
|---|
| End bp | 1918998 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641292663 |
|---|
| Product | regulatory protein GntR HTH |
|---|
| Protein accession | YP_001558674 |
|---|
| Protein GI | 160879706 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000597737 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTA CAAAACTTAG TGCTCCCTCC TTAAAGGAAT TGTTTATACA TGAATTAGAA
AAAATGATAT TATCCGGGAA ATTACCTATC GGTGAAAAAC TCCCACCAGA AAGAGATTTG
GCTCAATCCA TGCAAGTTAG CCGTGCGGTA GTCAATGCTG GTATTGCCGA ACTTGGACGG
AAAGGATTTT TAACTATAAA ACCAAGAGTA GGCACCTTTG TTGCTGATTA TCGCAGAAAC
GGTACTCTTG AAACCTTGAT TTCTATTTTG AATTATAATG GAGGAGTCTT ACGTGATGGA
GAAGTTCGCT CGATTTTAGA ACTAAGAATT GCTTTGGACA CCCTTGCAGT AGAACACTGC
ATTCCAAAGA TTACAGAGGA AGACATTTTA AGATTAAAAG ATTATGTGAA GCAGTTGGGT
GAAGCAAAGT CACCAGAAGC TGCAAGCGAA ATCGCCTTTC ATTTTCAGCA TGAGCTAGCT
TATCTATCCG GTAATACCTT AATGCCATTA ATCTTTTCTT CGTTTAAGAT TCCTGTACTA
TTTTTGTGGG AACGTTTTGT CTGTCTCTAT GGCTTAGAAG CACTTCATAA AAATACTGAA
ATCCTATGCG ATTACATTAC AGAGCGGAAA ACTGAAAAAG CGGTGGAATG GCTAAAGCAT
TCCATTAATG ACACGATTAG TGGAAATCGG CCGATTTATT ATTAA
|
|---|
| Protein sequence | MEFTKLSAPS LKELFIHELE KMILSGKLPI GEKLPPERDL AQSMQVSRAV VNAGIAELGR
KGFLTIKPRV GTFVADYRRN GTLETLISIL NYNGGVLRDG EVRSILELRI ALDTLAVEHC
IPKITEEDIL RLKDYVKQLG EAKSPEAASE IAFHFQHELA YLSGNTLMPL IFSSFKIPVL
FLWERFVCLY GLEALHKNTE ILCDYITERK TEKAVEWLKH SINDTISGNR PIYY
|
|---|
| |