| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1446 |
|---|
| Symbol | |
|---|
| ID | 5742396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1785864 |
|---|
| End bp | 1787213 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641292548 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001558559 |
|---|
| Protein GI | 160879591 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00281559 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATGT ATAAGTATTT AACTTTATTA AATGAAATTG AAACTAAGAT AAAAAGCGGT
ATTTATAAGC AGGGTGAAAA AATTCCTTCG ATACGTAGTT TATCCGAGAT CTACAATTGC
AATAAAAGTA CTGTGATTAG TGCACTAAAC GAATTAGAAA GAAAACATGT AATTTATTCC
CTACCCAAAA GCGGATATTA TGTTGTGACT ACAAAGAATG TCTCCGACCA TGGGAAGGTG
CCAAAATTCA ATTTTTCATC TTCTGCCCCT GATCCTGCTG TATTTCCATA TCTAGATTTT
CAGCATTGTA TTAATCAAGC AATTGATATT TATAAAAATG ACCTTTTTAT CTATGGAACA
CCAAAAGGAT TGCCTTCCTT AGTCGATGTA ATACAAAAGC AGCTGGCAAA TTACCAAGTG
TTTACTAGTA AGGAAAATAT CTTTATAACC TCAGGTGTTC AGCAGGCATT GTCCATCTTA
GCCGCACTTC CTTTTCCGAA TAATAAGCAA ACTATATTGC TTGAGCAACC AGGGTACCAT
TTATTCATTG AAGCATTGCA AACAATGCAG ATACCGGTCA TAGGCATAAG ACGAACCAGT
GAGGGAATTA ACTTTACAGA ATTAGAAAGA TTATTTCAAG AGGAAAACAT AAAATTTTTC
TATACCATGC CAAGATATCA CAATCCTTTG GGCACTTCCT ATTCACAAAA AGAGAAATAT
GAAATCTTAA AACTGGCGCA AAAATACGAT GTATTTATTG TAGAAGATGA TTATCTGGTT
GATTTTGAGC AGAACTCAAA AGCCGATCCT ATATATTCCT ATGATAATTC AAAAAATGTA
ATCTATTTAA AGAGCTATTC AAAGATAATA TTCCCAGGTT TGAGGATTGG TATTGCCGTA
ATCCCTGATA GTCTGATCAA CGTATTCAGC AGTTATAAAA GAATACTTGA TGTAGACAGC
TCAATGCTTT CCCAAGCTGC ATTGGAAATC TATATTAATA GCGGTATGTT TGAAAAACAC
AAAGAAAAAA TGAACGCAGC ATACTATTTA AGATCCAAAT GTTTAACTAC TGCGTTGAAA
AATAATTTGA ACCAATCCAA TCAGAATTTA TTTAAATATA CTCCTGTAAA AAATATATGT
GTGCATACCT ATGTTGAATT GGATAAGCGG ATATCGTGCG AAAAAGTTAT TAACCGTTTA
AGAAGAAAGT CAATACTAGT AGATGGTGTA AATAATAATT ATTTAAAGTC CTTCCCCATA
AATGATTCCA TAATAAAGAT TAACGTCTCA AATGTAGATG AGGAGCATAT TGAAGAGGGT
GTTTCACAGA TTGTTAAGGA AATTTATTAG
|
|---|
| Protein sequence | MSMYKYLTLL NEIETKIKSG IYKQGEKIPS IRSLSEIYNC NKSTVISALN ELERKHVIYS
LPKSGYYVVT TKNVSDHGKV PKFNFSSSAP DPAVFPYLDF QHCINQAIDI YKNDLFIYGT
PKGLPSLVDV IQKQLANYQV FTSKENIFIT SGVQQALSIL AALPFPNNKQ TILLEQPGYH
LFIEALQTMQ IPVIGIRRTS EGINFTELER LFQEENIKFF YTMPRYHNPL GTSYSQKEKY
EILKLAQKYD VFIVEDDYLV DFEQNSKADP IYSYDNSKNV IYLKSYSKII FPGLRIGIAV
IPDSLINVFS SYKRILDVDS SMLSQAALEI YINSGMFEKH KEKMNAAYYL RSKCLTTALK
NNLNQSNQNL FKYTPVKNIC VHTYVELDKR ISCEKVINRL RRKSILVDGV NNNYLKSFPI
NDSIIKINVS NVDEEHIEEG VSQIVKEIY
|
|---|
| |