| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1301 |
|---|
| Symbol | |
|---|
| ID | 5744907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1627659 |
|---|
| End bp | 1628696 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641292406 |
|---|
| Product | pectinesterase |
|---|
| Protein accession | YP_001558417 |
|---|
| Protein GI | 160879449 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGAA CGATTTACGT ATCCAAAGAC AAAACATCAG AACATGAATT TTCTACGATT
ACTGATGCAC TCTCAAGTAT TCCAGAAGGA ACTATAGAGC CGGTAACTAT TTTTATTAAG
AAGGGAACAT ACAAAGAAAA ACTTATCATT AAGCAGCCTA ACTTAACCTT AATTGGTGAA
TCAAAAGAAG AGACCATACT TACCTTTGAT GATTATGCTA ACATGATTAT GGAAGATGGC
AGTAAAAGAG GAACGTTTCG CACCCCTTCT GTATTCATTG ATGCTAATGA TTTCACAGCA
AAGAATCTCA CTTTTCAAAA TAACTCTGGT TATGGTCATC AAGTAGGACA AGCACTTGCA
CTTTATGTGG ATGGAGACCG AATGGTATTT GATAATTGTA TTCTTCTTGG TAGTCAAGAT
ACCTTATTTA CAGCTCCACT CCCTCCATCA GCAAACCAAC TTGGTGGTTT TACTGGACCA
AAAGAGTTTG AACCACGAGT AAATGGTCGT CATTATTATC GTAACTGTTA TATTCGAGGC
GATGTTGATT TTATCTTTGG AAGTGCAACT TCATTTTTTG ATCACTGTGA AATTTTTTCT
CAAAAGACAG ACGATCTTCC TCCTGCAAAA CAAGGAGAAG AACAGAAGAA CTATGGCTAT
ATAACTGCAG CAAGTACTGC AGAAGGACAG GAATATGGAT ATGTCTTTTC TCATTGCCGT
CTAACCAGCG ATTGCCCAAA ACATAGCATA TATTTAGGAA GACCTTGGCG AAACTTTGCT
AAGACAGTAT TTCTACATTG TGAAATTGGG GAGCATATTC GTGAGGAAGG TTGGCATGAC
TGGAATAAAC CAGAAGCTCA TAAAACGATG CTTTATGCAG AATATCAAAG TACTGGTGAA
GGTTCAAAAG CTATCACTGA AGGAAAACGA GCTTCTTTTT CTAAGCAGCT CTCAGATTAT
GAAGCACTTA AATATACCAA GGAAAAAGTA TTAGCTGGTG ATGATAACTG GGTACCATCT
TTAGTACTAG CTGATTAG
|
|---|
| Protein sequence | MSRTIYVSKD KTSEHEFSTI TDALSSIPEG TIEPVTIFIK KGTYKEKLII KQPNLTLIGE
SKEETILTFD DYANMIMEDG SKRGTFRTPS VFIDANDFTA KNLTFQNNSG YGHQVGQALA
LYVDGDRMVF DNCILLGSQD TLFTAPLPPS ANQLGGFTGP KEFEPRVNGR HYYRNCYIRG
DVDFIFGSAT SFFDHCEIFS QKTDDLPPAK QGEEQKNYGY ITAASTAEGQ EYGYVFSHCR
LTSDCPKHSI YLGRPWRNFA KTVFLHCEIG EHIREEGWHD WNKPEAHKTM LYAEYQSTGE
GSKAITEGKR ASFSKQLSDY EALKYTKEKV LAGDDNWVPS LVLAD
|
|---|
| |