| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1080 |
|---|
| Symbol | |
|---|
| ID | 5741915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1364747 |
|---|
| End bp | 1365703 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641292185 |
|---|
| Product | peptidase U32 |
|---|
| Protein accession | YP_001558197 |
|---|
| Protein GI | 160879229 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.554498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCT TAGTTCCCTT AAATAGTGCA GAACATATAA AGGATTATAT GGAGTGCGGT
GCCAAAGAAT TCTATATTGG ATTCTATGAT AAAGAATGGT CAAATCACTT TGGTGAATAT
GCAGATATTA ATCGTCTCAC TGGATTTAAA GAAAGTGCGA ATCCCAATAA TTTAGAAGAA
ATGATAAAAG TGATAGAAAC GATTAAAGCA CAAGATGGGA TTATATTTGT AACGTTTAAC
TCCAGTAGTT ATAGTGAACA GCAATTGGAG TATATTAGAA ACTATTTTAA AAGTTTAGCA
AGAACTAAGG TTGATGGTGT TATTGTTTCC TGTATTGAAC TTGTAACTCT TGCAGTGGAG
GAAGGATTGA CTGCCAGTAT CAGTACCATT AGTGGTATCT ATAACTCCGA TATGGCAAGA
TTTTATTATG AACATGGTGC ATGCAGAATC ATATTACCAA GAGATTTATC CTTAGATGAA
ATAGAAGGGA TAAAGAATAC TGTGCCACAG CCGGAATATG AGGTATTTTT AATGAGGAAT
GGCTGTATAT TCTCTGATTC CAACTGCCTT GGGTTACATC GATTGGAGCA AAAATCTTTT
TGTAGCTGCT TATTAAAATC AAAGAATGAA TTTGTAGAAT CAATAGAAGA GTTTGAACTT
CGTCATCAGA TGGAATTAAA TAATATCCTT TATAACCAAT ATTATCATGA TATGGCATGT
GGTATGTGTG CTATCTATCG ATTATTAAAT ATGGGGATAT CCGCCTGTAA GATTGTTGGC
AGATCGGATG ATTGGGAAAA TATCTGTGCT GATATTAAAG ATGTTTATGA AAATATTCAG
ATAGCTTATG ATAGTAAATC AGAGGATGAA TATAAAAAAC GTATGGTTTT TCCGAATAAT
AGCAAGCAGA TTTGTAAGCT TGGTTTATGC TGCTATTATC CGGAAGCAAG ATTTTAA
|
|---|
| Protein sequence | MNILVPLNSA EHIKDYMECG AKEFYIGFYD KEWSNHFGEY ADINRLTGFK ESANPNNLEE
MIKVIETIKA QDGIIFVTFN SSSYSEQQLE YIRNYFKSLA RTKVDGVIVS CIELVTLAVE
EGLTASISTI SGIYNSDMAR FYYEHGACRI ILPRDLSLDE IEGIKNTVPQ PEYEVFLMRN
GCIFSDSNCL GLHRLEQKSF CSCLLKSKNE FVESIEEFEL RHQMELNNIL YNQYYHDMAC
GMCAIYRLLN MGISACKIVG RSDDWENICA DIKDVYENIQ IAYDSKSEDE YKKRMVFPNN
SKQICKLGLC CYYPEARF
|
|---|
| |