Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_1071 |
Symbol | |
ID | 5741907 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 1354865 |
End bp | 1357051 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641292178 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001558190 |
Protein GI | 160879222 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4124] Beta-mannanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.535323 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAGAG GTAAAAAGAG AGTAATTGCA ATGGCGGTAT CTTTATGGGT TGTCGTAGCC ATGCTATTTA CTAGTGTACC TGGACCTTTG GGGTCAATAA TAGGTACAAA AAGCAGTACA AAGGTACAAG CTGCTGAGAA ATTTTCAACG AAATTAGAAG CAGAGAATGG AAAGATGACT GGTACTGTAA CGGTAGCCAC TACAAGGCCA GGGTATAGTG GAACTGGATA TGTCACCGGT TTTACTCAAA ACAGCAGTAA TTCCTGGTCA ACTTCTGTAG TGATTCCGAC AACTGGTCAC TACACATTTA CAATCCGAAG TGCTGCAGAT AGTTATAAAG AAAATTATCT TTATATTAAT GGTACACAAG CTGGAATTAT TTATAGTACA GGTGATGGTA AATGGGGAGA TACTGTCATC GAAAGCGTAT ACTTAGAGGC TGGAACTATC ACTTTATCCG TAAAGGAAAA TTGGGGTTGG TTTGACCTAG ATTACATTGC AATTGAGGCG GGAAGTGGTG TTGATAACTC TGTTTATCAG AAGGCAACGT CTACTCTAGT AAACCCGAAT GCAAATGAAA AAACAAAGAA TATTATGGCA TATCTAAAGA GTATCTACGG GAAAAAGACT TTAGCAGGTC AGTCCTGTAC GTTAAACGCA AGCACTGAAA TTGAAGCACT TTATAAAGCA ACTGGAAAAT ATCCTGCAAT TCGTATGCTT GATTTAATCT TTTGTTCTCC AGCAAGCGAC TGGCATTCCA CAGGAGAAGT TGATTTGGCA CTTGACTGGG ATAAAAAAGG AGGACTAACG ACATTTCAGT GGCATTGGCA TGCTCCAAAA GGTGGTGCAT CTTTTTATAC CGATAAAACA TCATTTGATT TATCCAAAGC AGTAACATCT CAAAATATCA GTAGATTGCC ATTGGCAGAT GTAAAAGCAT TGTATGATTC GGGTAAGATT TCTGAAGAAT GTTATCTGAT GGTTCGCGAT ATCGATGCAA TCTCTGGCTA TCTAAAGCAA TTACAAGATG CCGGTGTCAC AGTTCTTTGG AGACCGCTTC ATGAAGCGAG TGGCGGTTGG TTCTGGTGGG GCGCTGCCGG AAAAGATCCA TACCTTTGGT TATATCGCCT CATGTTTGAT CGCCAGACGA ATTATCATAA ATTAAACAAC CTAATATGGG TATGGAATGG ACAGGATGCA GCTTGGTATC CAGGTGATGC CTATTGTGAT ATCGTAGGAA CTGATATTTA TGCTGATAAT CGCAATTACA GTGCACAAAC AGCTCAATTT AATAAAACAG TAAATTATGC GAATGGAAAT AAAATGGCAG CTCTTAGTGA AAATGGTGTA ATGATTGACC CAGCTTTGAT GACGAGAGAC AATACCTTCT GGTTATGGTT TGCAGTATGG TATGGAGATT TCCTTATCGA TTATTCGGGC AACCTAAATG GAACATATAC TGAGGCTTCT ATGGTGAAAA AGGTTTATAA CAGTAATGAG GTGATAACCT TGGATAAACT ACCTAATTTT AATGGAACAA CTCCAACGGT AACACCAACA CCAACACCAA CAGTTAAGCC TACAGTAACG CCAACAGTAA CACCGACGCC AACAGTTAAG CCAACGGTAA CGCCAACAGC AACACCGACA GCAACACCGA CACCAACAGT TAAGCCAACA GTAACACCTA CACCAACGGT TACACCATCA GTAACACCAA TTCCAGGTAG TTTTACTCTT TCTTTAACCA ATACAGGTAA TAACAATCTA TCAACAAACA CAATAAATGC TGATTTTAAG ATTAAACATG AGAAAGGAAG CGATATAGAT TTATCTAAGC TAGTGATTCG TTATTATTAT ACGAAGGAGG GAACTGCGAA GGAGAACTTC TATTGTGATA CTGCTGCAAT GCAATTAAAT AAAGATCCAT GGTACATTCC ATATACATCG GTAGTTAATG GAACCTTTAA CTCAATGGCG GTACCAAAAA CAAAAGCAGA TTCGTATCTT GATGTATCGT TTAACACAAC TGATAAATTA TCCGCGGATT CTACCTTTAT AGTGAATATC AGATTTACGA AGAGTGATTG GAGCTTGTAT AACCAAGAAA ATGATTATTC TTATGGAGAT AGTACAAAAG TTGTTGTGTA CTATAATGGT AAGTTGGTAC TAGGTGTGGA GCCATAG
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Protein sequence | MIRGKKRVIA MAVSLWVVVA MLFTSVPGPL GSIIGTKSST KVQAAEKFST KLEAENGKMT GTVTVATTRP GYSGTGYVTG FTQNSSNSWS TSVVIPTTGH YTFTIRSAAD SYKENYLYIN GTQAGIIYST GDGKWGDTVI ESVYLEAGTI TLSVKENWGW FDLDYIAIEA GSGVDNSVYQ KATSTLVNPN ANEKTKNIMA YLKSIYGKKT LAGQSCTLNA STEIEALYKA TGKYPAIRML DLIFCSPASD WHSTGEVDLA LDWDKKGGLT TFQWHWHAPK GGASFYTDKT SFDLSKAVTS QNISRLPLAD VKALYDSGKI SEECYLMVRD IDAISGYLKQ LQDAGVTVLW RPLHEASGGW FWWGAAGKDP YLWLYRLMFD RQTNYHKLNN LIWVWNGQDA AWYPGDAYCD IVGTDIYADN RNYSAQTAQF NKTVNYANGN KMAALSENGV MIDPALMTRD NTFWLWFAVW YGDFLIDYSG NLNGTYTEAS MVKKVYNSNE VITLDKLPNF NGTTPTVTPT PTPTVKPTVT PTVTPTPTVK PTVTPTATPT ATPTPTVKPT VTPTPTVTPS VTPIPGSFTL SLTNTGNNNL STNTINADFK IKHEKGSDID LSKLVIRYYY TKEGTAKENF YCDTAAMQLN KDPWYIPYTS VVNGTFNSMA VPKTKADSYL DVSFNTTDKL SADSTFIVNI RFTKSDWSLY NQENDYSYGD STKVVVYYNG KLVLGVEP
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