Gene P9211_17291 details

Gene Information

• Locus tag: P9211_17291
• Symbol: rimM
• ID: 5731708
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9211
• Kingdom: Bacteria
• Replicon accession: NC_009976
• Strand: +
• Start bp: 1555494
• End bp: 1556024
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641286114
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001551614
• Protein GI: 159904270
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTAGAA AAGATTCTTG GCTAACAATT GGGAAGCTTG TGGGAGCTCA AGGTTTGCGT 
GGCGAGGTAA AAGTTAATCC AAGTAGTGAT TTCCCAGAAA GATTCATCAA CCCAGGGGAG 
CGATGGCTTC AAAAAAACAC TGAAGAGCCT TCTAGAATTG AATTAAAGTC TGGCAGGCAA 
CTACCAGGAA AATCTATTTA TATTGTTTCA TTCATAGGAA TCACTGACCG TAATAAGGCC 
GAGTCTATTG TTGGTAATAA ATTATTAGTC CCATCTGATC AAAAGCCCAA GCTAAAAGAA 
GGTGAATTCC ATCTCGTTGA CCTTTTAGGG TTAAAAGCAA AATTCACTCA AGATGGTTCT 
GATGTAGGAG AAGTGATTGA TTTAACAAGT GCTGGCAATG ATCTTCTAGT AATCAAACTC 
GTTGAAGGGA AGACAGTACT GATACCCTTT GTCAAAGAAA TTGTGCCTGT GATCAATCTT 
AAGCAAGGTT GGTTACTTAT TAAGCCTCCA CCAGGATTAC TAGAGCTTTG A 

 

Protein sequence

MSRKDSWLTI GKLVGAQGLR GEVKVNPSSD FPERFINPGE RWLQKNTEEP SRIELKSGRQ 
LPGKSIYIVS FIGITDRNKA ESIVGNKLLV PSDQKPKLKE GEFHLVDLLG LKAKFTQDGS 
DVGEVIDLTS AGNDLLVIKL VEGKTVLIPF VKEIVPVINL KQGWLLIKPP PGLLEL