| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_11431 |
|---|
| Symbol | ddpA |
|---|
| ID | 5730260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 1045242 |
|---|
| End bp | 1046846 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641285511 |
|---|
| Product | ABC transporter substrate-binding protein |
|---|
| Protein accession | YP_001551028 |
|---|
| Protein GI | 159903684 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.88428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAT TATTTAAATC CAAAGCCAAG GCCTACAGAA AGCTATTAAC ATTACTAGCT
ACTTCTCTAA TAATCATCAC TCAAACCTCT TGTAAGGCAA CTAAAGAATC AGATCGAATA
ATCGTTGCAA GCAAAGGGAA AATTGAATCG TTAGATCCTG CCCAAGCCAA TAAGTTGTTG
GCAATTCAAC TTATTAGTGC TTTAGGAGAC CCTCTATACA GAATTAATGA ATCAGGTTTA
CTTGAGCCAA GACTTGCAAA AGACTATCCT CAGATAAGCA AAGATGGTTT AACTATTTCA
ATAGCTTTGA GAGAAGATGT ACTTTTTCAT GACGGGACAC CTTTTAATGC AGATGCTATG
GCATTTAGTA TTAAACGTTT TATGGAAATA GGTACTCTTA ATTATGTAAT AGGAGAAAAA
ATAACCAAAA TTGAAACACC AGGTCCTTTT TTGATTCGCC TTAGACTAAA TAAACCTTCA
AGTTCTATAA AAGGATTACT CAGTTCTATA AACCTGACCC CAGTATCTCC CAAAGCATAT
TTAGAGCATC AGGATAAATT CTTAAACAAA AAATTCATTG GAACAGGTCC CTATCAATTA
GATAGCTTTA CTCCAGAAAG ACAACGTTTA ATACCATTCC CACGTTATTG GGATAAAGCC
CCAAAAAACC TTGGAATTGA CTATGTAAGT TACACAACTT CTACATCTCT TTTTAGCGCA
ATTAAAACTG GTCAGGTAGA TGTTTTATTG TCCAACTCAG TTGAAGATGG GCACCGATTA
GCTCTTCATA AACTTTCAAA GAAAGGAAAG CTTATAGAAG GGATTGGACC GGCTATGCAA
ATTGGATATA TTGCCTTTCG TAGTAATTCA GCGCCACTGG ATAATAAGAT TTTAAGATCG
GCCCTTTCAT ACAGCCTTGA TAGAAATCTT ATTTCTAGAA AAGTAGGTTA TGGGTTAAGA
GAGCCTTTAA GATCAATAGT TCCACCTATT CTAAAAACCA GTAAAACATC ACCTTGGCCA
AAATATAATC CTCAAATTGC AAGAGACTTG TTTAAGAAAG CAGGCTTATG TGATTCCAAC
AAAGTGACAA TCCCTTTGAC ATTTAGATCA AACGTTCCTG CAGACAAACT ATTAGCGCTT
ACTTGGCAAG AACAATTAGG AAGAGATTTT TCAGATTGTA TAACAGTTAA ACTCAATGGA
GTTGAGTCTA CGACTGTATA TAAGCAGCTT GCAGAAGGAG CCTATGAAGC AGTCATACTT
GGCTGGACTG GAGAATACCC TGATCCAGAG GCATATTTAT CACCGTTACT GGACTGCACT
AAAAGTCAAG GTTCCACTTG CTTAGAGGGA GAGGCTGTTT ATGGTGGAAC TTTTTGGGCA
TCAAATCAAA TTAAAACCTC ACTTGAACAA AGCGAAAATC TACAAGGTTC TCAAAGACTA
GAAAAATTAT CCGAAATTGA ATTTTTAGCG GCCGATGGAG CCGCAATATT ACCTGTTTGG
CTTGTAAAGC CTAGAGCTTG GGCTCAACCT AATTTTTCTC GACCAAAGTT TGATGGGAAC
GGAAGATTAT TACTAGACCG TCTTCAAAAA GCAATAAATG AATAG
|
|---|
| Protein sequence | MTLLFKSKAK AYRKLLTLLA TSLIIITQTS CKATKESDRI IVASKGKIES LDPAQANKLL
AIQLISALGD PLYRINESGL LEPRLAKDYP QISKDGLTIS IALREDVLFH DGTPFNADAM
AFSIKRFMEI GTLNYVIGEK ITKIETPGPF LIRLRLNKPS SSIKGLLSSI NLTPVSPKAY
LEHQDKFLNK KFIGTGPYQL DSFTPERQRL IPFPRYWDKA PKNLGIDYVS YTTSTSLFSA
IKTGQVDVLL SNSVEDGHRL ALHKLSKKGK LIEGIGPAMQ IGYIAFRSNS APLDNKILRS
ALSYSLDRNL ISRKVGYGLR EPLRSIVPPI LKTSKTSPWP KYNPQIARDL FKKAGLCDSN
KVTIPLTFRS NVPADKLLAL TWQEQLGRDF SDCITVKLNG VESTTVYKQL AEGAYEAVIL
GWTGEYPDPE AYLSPLLDCT KSQGSTCLEG EAVYGGTFWA SNQIKTSLEQ SENLQGSQRL
EKLSEIEFLA ADGAAILPVW LVKPRAWAQP NFSRPKFDGN GRLLLDRLQK AINE
|
|---|
| |