| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1615 |
|---|
| Symbol | |
|---|
| ID | 5737711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 1508116 |
|---|
| End bp | 1509876 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641284116 |
|---|
| Product | V-type ATP synthase subunit A |
|---|
| Protein accession | YP_001549659 |
|---|
| Protein GI | 159905997 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1155] Archaeal/vacuolar-type H+-ATPase subunit A |
|---|
| TIGRFAM ID | [TIGR01043] ATP synthase archaeal, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.110915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGTCG GTAAAATTAT CAAAATATCC GGTCCGGTTG TTGTTGCCGA AGGCATGAAA
GGTTCCCAGA TGTTTGAAGT GGTTAAAGTA GGAAACGAAG GTTTAACCGG GGAAATCATT
CAGTTAACTG AGGACGAAGC AATCATTCAG GTTTATGAAG AAACCGCTGG TATCAAACCA
GGAGAAGGAG TTACAGGAAC TGGTGCTCCA TTATCAGTAG AACTCGGCCC TGGTATGTTA
AAAGCAATGT ACGATGGTAT TCAAAGACCT TTAAACGAAA TCGAAAATGC TACAGATTCA
ATTTACATCC CAAGAGGAGT AAGCGTTCCA TCAATCTCAA GAGAAATTAA ATGGGATTTT
GAACCTATTG CAGCAGTTGG AGATGAAGTT ATAACTGGGG ACGTTATCGG TACAGTTCAA
GAAACTGCAT CAATCGTTCA CAAAATCATG ATTCCTTTCG GAGTTAGCGG TAAAATCAAA
GAAATTAAAG CAGGCAGCTT CACTGTTGAA GAAACAATTG CAGTTGTTGA AACCGCTGAA
GGCGAAAAAG AAATCATGAT GATGCAAAAA TGGCCTGTAA GAAAGCCAAG ACCATCAAAA
GGAAAACAAG CTCCAGTAAT TCCATTAATT ACCGGTCAAA GAGTTGAAGA TACATTCTTC
GGACTTGCAA AAGGTGGTGC TTCAGCAATT CCAGGTCCAT TCGGAAGTGG AAAAACTGTT
ACACAACACC AGCTTGCTAA ATGGTCTGAC GTGGATGTTG TGGTATACAT CGGTTGTGGA
GAAAGAGGTA ACGAGATGAC AGAAGTTATC GAAGAGTTCC CACACTTAGA TGATATCAAA
ACAGGAAACA AATTAATGGA CAGGACCGTA TTAATTGCAA ACACATCAAA CATGCCTGTA
GCTGCAAGAG AAGCTTCAGT ATATACTGGA ATTACAATTG CAGAATACTT CAGAGACCAA
GGACTCGGTG TTCTCTTAAC TGCTGACTCA ACATCAAGAT GGGCAGAAGC AATGAGAGAG
ATCTCAGGTA GACTTGAAGA AATGCCTGGG GAAGAAGGAT ACCCTGCATA CCTTTCATCA
AAACTCGCTC AGTTCTACGA GAGAGCAGGA AGAGTTGAAT GTTTAGGTTC AGAAAACAAA
CAAGGATTCG TATGTATTGT AGGTGCAGTT TCACCACCAG GTGGTGACTT CTCAGAACCA
GTTACATCAA ATACATTAAG AATTGTTAAG GTGTTCTGGG CATTAGATGC AAACCTTGCA
AGAAGAAGAC ACTTCCCTGC AATCAACTGG TTAACAAGTT ACTCACTCTA TATTGATGAC
ATCGCGGGCT GGTGGCAACA AAACACCGCA GCAGACTGGA GATCATTAAG GGATGAAGCA
ATGAGCTTAC TCCAGAAAGA AGCAGAACTC CAAGAAATCG TTCAGCTCGT TGGTCCAGAT
GCACTTCCGG ACAGAGAAAG AGTTATCTTA GAAATTGCAA GAATGTTAAG AGAAGACTTC
TTACAGCAAG ATGCATACCA CGAAGTAGAC AGCTACTGTT CACCAATAAA ACAGTACCAC
ATGTTGAAAA TCATCATGAC GTTCTACAAG AAAGGTTTAG ATGCAGTTGC TAAAGGTGCT
GACCCAGCAG GTATTTCAGC TGTTACTGTA AAAGGAGACA TTGCAAGAAT GAAATACTTA
GTTGAAGATG AATTTGTAAA CACGAAAGTA CCTGAAATCA TTAACAAAAT GGAATCCGAA
TTAGGTGCTT TAATCAAATA A
|
|---|
| Protein sequence | MVVGKIIKIS GPVVVAEGMK GSQMFEVVKV GNEGLTGEII QLTEDEAIIQ VYEETAGIKP
GEGVTGTGAP LSVELGPGML KAMYDGIQRP LNEIENATDS IYIPRGVSVP SISREIKWDF
EPIAAVGDEV ITGDVIGTVQ ETASIVHKIM IPFGVSGKIK EIKAGSFTVE ETIAVVETAE
GEKEIMMMQK WPVRKPRPSK GKQAPVIPLI TGQRVEDTFF GLAKGGASAI PGPFGSGKTV
TQHQLAKWSD VDVVVYIGCG ERGNEMTEVI EEFPHLDDIK TGNKLMDRTV LIANTSNMPV
AAREASVYTG ITIAEYFRDQ GLGVLLTADS TSRWAEAMRE ISGRLEEMPG EEGYPAYLSS
KLAQFYERAG RVECLGSENK QGFVCIVGAV SPPGGDFSEP VTSNTLRIVK VFWALDANLA
RRRHFPAINW LTSYSLYIDD IAGWWQQNTA ADWRSLRDEA MSLLQKEAEL QEIVQLVGPD
ALPDRERVIL EIARMLREDF LQQDAYHEVD SYCSPIKQYH MLKIIMTFYK KGLDAVAKGA
DPAGISAVTV KGDIARMKYL VEDEFVNTKV PEIINKMESE LGALIK
|
|---|
| |