| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1147 |
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| Symbol | secD |
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| ID | 5738218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C6 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009975 |
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| Strand | + |
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| Start bp | 1076004 |
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| End bp | 1077170 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641283640 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001549192 |
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| Protein GI | 159905530 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTGC TAAAAGACCC TAAAGTAATA ATTCTTTTAG TATGTATTTT GGCCTCCTTG
CTACTTATTG CATTTAAAGG AATTTCCTTT GGTGTCGATT TAAGTGGTGG TTCTACAATA
GTATTGCAGA CTGAAACTGA ACTTTCAGAT TCTGAAATGG CAGTTGTAAA TGAAATATTA
ACAAGCAGGC TAAATACAAA CGGATTAAGT GACGTTAGGA TTTACCCGAG GGGTAGTGAC
GAGGTGGTTA TTGAAATACC TGAAAGTGCG GATCTAGAAA GAATACAAAA GATTTTAACA
CAACAAGGGG TATTTACTGC AATAATCGAT AACCAAACTG CATACACTGG GCAAGATATA
TCATATGTAG AAGAACCTGG AACAACTGCT TCAGGTTATG GGGTAGGATT TAAATTAACT
CTTGATGGGG CACAAGGCTT TGCAGATATA GCCTACGGAA AAGGAGGATA TCCTGTAGAA
CTCTACATGG ACGGAAATTT GATAAGTGCT CCAATTCTTT CAGCAGATCT TGCTGACGGA
AATATACACC AAAGTCAGGT AATCACTGTT GCAGGGTCTT CCCCAACAGA AGATGATATC
GATGAAGCAT GGGTTATCTA CACAGCTTTA CAATCAGGTT CACTCCCGGT AAAAGTACAG
ATCGAATACA TCAGTTCAGT TTCCCCTACT TTGGGATCAG AATTTATAAA AGGATCAGCA
ATTGCAGGAT TTTTTGCATT CATTGCTGTT GCAGCAGTTA TTTCATTTAG ATATAGAAAT
CCAAAGATAG TTCTTCCAAT TCTGATAACT GGATTTTCAG AAGTTCTGTT AATTTTGGGT
TTCGCATCAC TTATCGATTG GAAACTTGAC CTTGCATCAA TTGCTGGAAT TATTGCAGCG
GTAGGTACTG GTGTTGATCA CCAGATAGTT ATCACCGACG AAACAATTGC TGGTGAAGCT
AAAAAAGTAA CCAAAAGTAT TAAAAGGGCG TTCTTCATTA TATTCGGTGC AGCCGCTACA
ACAATTGCAG CAATGCTTCC ATTGTTTGTA ATGGGTATTG GAATGCTCAA AGGGTTTGCA
ATAACCACAA TTGCAGGTGT TTTAATGGGA ATTTCAATTT CAAGACCTGC ATTTTCGAGA
ATCATACAAT ACGTATTAAA GCATTAA
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| Protein sequence | MKLLKDPKVI ILLVCILASL LLIAFKGISF GVDLSGGSTI VLQTETELSD SEMAVVNEIL
TSRLNTNGLS DVRIYPRGSD EVVIEIPESA DLERIQKILT QQGVFTAIID NQTAYTGQDI
SYVEEPGTTA SGYGVGFKLT LDGAQGFADI AYGKGGYPVE LYMDGNLISA PILSADLADG
NIHQSQVITV AGSSPTEDDI DEAWVIYTAL QSGSLPVKVQ IEYISSVSPT LGSEFIKGSA
IAGFFAFIAV AAVISFRYRN PKIVLPILIT GFSEVLLILG FASLIDWKLD LASIAGIIAA
VGTGVDHQIV ITDETIAGEA KKVTKSIKRA FFIIFGAAAT TIAAMLPLFV MGIGMLKGFA
ITTIAGVLMG ISISRPAFSR IIQYVLKH
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