| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0985 |
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| Symbol | |
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| ID | 5738849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C6 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009975 |
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| Strand | - |
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| Start bp | 933439 |
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| End bp | 934440 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641283471 |
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| Product | H/ACA RNA-protein complex component Cbf5p |
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| Protein accession | YP_001549032 |
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| Protein GI | 159905370 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0128242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAATTAA TTGTAAAAGA AGAATCAAAA ACGGATTATA ATTACGGGTC AGACCCATAC
AAAAGAGATA TAAAAACACT CCTAAATACT GGGCTCGTTG TAATTGATAA ACCATCTGGC
CCAACTTCCC ACGAAGTTGC TGCATGGGTT AGAAACATGC TTAATTTAGT TAAAGCAGGT
CATGGCGGAA CACTTGACCC AAAAGTTACT GGAGCGTTAC CAGTAGCTTT AGGAAACACT
ACAAAATGCG TTCCAATCTG GCACATTCCT CCAAAAGAAT ACGTGTGTTT GATGCATTTA
CATGATGATG CTAAACTTGA AGATATTGAA AACATTTTTA AAGAATTTAC TGGAAGAATT
CACCAAAGGC CCCCTTTAAA AGCTGCTGTT AAAAGAAGCC TCAGAATTAG AAAAATTTAC
GAAATTGAGA TTTTAGAAAT TGATGGGCGA GACATATTAT TTAGAACGAA ATGCCAGTCT
GGAACTTACC TTAGAAAACT TGTGGATGAT ATGGGGGAGG CCCTAGGAAC TTCTGCACAT
ATGCAGGAAC TTAGAAGAAC GATTAGTGGG CCATTTTACG AAAATGAAGC TGTTTATTTA
CAGGATTTAC TCGATGCATA CATATCCTGG AAGGAAGATG GAAACGAAGA AGAATTAAGA
AAATTAGTAA AACCTCTTGA ATACGGGCTA CAACACCTTA AAAAAATAAT TGTAAAGGAT
AGCGCAGTTG ATGCAGTATG TCATGGTGCT ACACTTTATT CCTCGGGTGT TTCAAAAATT
GAAAAAGGAA TTGGAACTGA TGAAGTTGTT TTAATTGAAA CACTGAAAGG AGAAGCTGTT
GCAGTTGGAA AACCGCTCAT GAATACAAAA GATATGTTAA AAACCGAAGA AGGCGAAGTT
GTAGAAATAA CCCGTGTTAT AATGGAGCCT GGAATTTATC CAAGAATATG GAAAAAAAGA
AATAAAAATG ATAAAAGTAA ACCGGAATCA AAGAAGAACT AA
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| Protein sequence | MELIVKEESK TDYNYGSDPY KRDIKTLLNT GLVVIDKPSG PTSHEVAAWV RNMLNLVKAG
HGGTLDPKVT GALPVALGNT TKCVPIWHIP PKEYVCLMHL HDDAKLEDIE NIFKEFTGRI
HQRPPLKAAV KRSLRIRKIY EIEILEIDGR DILFRTKCQS GTYLRKLVDD MGEALGTSAH
MQELRRTISG PFYENEAVYL QDLLDAYISW KEDGNEEELR KLVKPLEYGL QHLKKIIVKD
SAVDAVCHGA TLYSSGVSKI EKGIGTDEVV LIETLKGEAV AVGKPLMNTK DMLKTEEGEV
VEITRVIMEP GIYPRIWKKR NKNDKSKPES KKN
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