| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0276 |
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| Symbol | |
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| ID | 5738871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C6 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009975 |
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| Strand | + |
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| Start bp | 251152 |
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| End bp | 252444 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 641282740 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_001548329 |
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| Protein GI | 159904667 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCCC TGTTTATTCA AAATGCGAGA AAAAAAGAAA GTGAAGAGAT ACTTAATCAG
TTTAGGAAAG AAAAACAGTT TAAATTCAGA AATAATAAAA TAAGGCGGAA ATTAAGTGAA
ATGCCGATAA ACATTAACAA ATTCATCTTA GATATGGAAA GGTTTGACGG AACACTCAAA
AAATATCCTG AAGATTTTAT TGTTGAAGAG ATAACTCCTG AAGGAACAGT TTTGGAAGTT
GGAAAGGAAA TCGGTTTTGA AGATGTTGAA ACCTGGCACG GCTCATTTAT TCATTTTACA
GTTGAAAAAA CTAACTGGAA CACGATGGAT GCATTAAAAC AGATTGTAAA AGCAACAAAA
ACAAAACGGA AAAATTTTGG ATTTGCAGGA ACTAAAGACA AATTTGCGGT AACTACCCAG
AGATTTGGGT GCTTTGGACT TAAAAAAGAA CAGCTTGAAA ATATCAAAAT TAAAGATATT
ATCATTCGCG ATGTTCAAAA AACGAATAAA AAACTCAGAA TGGGCGACCT CTGGGGAAAC
AAGTTCACGA TAAAAATTAG GGATTTGGAA CTTTCAAAAA AAGAAATTAA AAGAATTTCC
GATTTAAAAT TAGATTACGT ATTAAATTAC TATGGAATAC AGAGATTCGG ACTTGTTAGG
CCGATTACAC ATATTGTTGG AAAATTTATC TATGAAAGAG ACTTTGAAAG TGCATTTTAC
ACCTACTGCG GAACCCCGAT AAGTGAAACT GGCGATTCCC TCGAAGCAAG ACAGCTCGTT
GACATGGGCG AATTTAAAAA AGCTTTAAAA TTATTTAATA GAAACCACGA CTATGAAAAA
AGGTTAATTC AGCAGTATTT AAAATACAAA GACTTTAAAA TGGCTTTTAC TGCATTGCCC
CCCCAATTAA ACAGTATGTT TGTAAATGCT TATCAGGCAT ATTTATTCAA CGAAATGATA
AACGAAAGAT TTGATTACGG GTTTGATGTA AAAGAAGGAG ATATTTTAGA AGACAATACT
CCAACAGGAA CGTTAATTGG ATACGATACT GAATTTAGCG GTGGAATTCA GGGTGAAATT
GAAAAAGAAA TTTTTGAAAG GGAAAATCTC GATTTGAAAA AATTTAAAAT TGAAGACTTT
GGAAATTTCT ATGGAACTAG AAGAAAAATG ATAACTCCAA TTTATGACTT TAAAAGTAGC
TTTAAAGATG AAATTTTTGA ATTAAGCTTT AAACTTGAGC GCGGAAATTA CGCTACAATC
GTTACAAGAG AATTTACCGG AAATTTGAGT TAA
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| Protein sequence | MQPLFIQNAR KKESEEILNQ FRKEKQFKFR NNKIRRKLSE MPININKFIL DMERFDGTLK
KYPEDFIVEE ITPEGTVLEV GKEIGFEDVE TWHGSFIHFT VEKTNWNTMD ALKQIVKATK
TKRKNFGFAG TKDKFAVTTQ RFGCFGLKKE QLENIKIKDI IIRDVQKTNK KLRMGDLWGN
KFTIKIRDLE LSKKEIKRIS DLKLDYVLNY YGIQRFGLVR PITHIVGKFI YERDFESAFY
TYCGTPISET GDSLEARQLV DMGEFKKALK LFNRNHDYEK RLIQQYLKYK DFKMAFTALP
PQLNSMFVNA YQAYLFNEMI NERFDYGFDV KEGDILEDNT PTGTLIGYDT EFSGGIQGEI
EKEIFERENL DLKKFKIEDF GNFYGTRRKM ITPIYDFKSS FKDEIFELSF KLERGNYATI
VTREFTGNLS
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