Gene Haur_5260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_5260 
Symbol 
ID5737218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009974 
Strand
Start bp32366 
End bp34042 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content47% 
IMG OID641282424 
Productleucine-rich repeat-containing protein 
Protein accessionYP_001548015 
Protein GI159901770 
COG category[S] Function unknown 
COG ID[COG4886] Leucine-rich repeat (LRR) protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCGTA ATCCCGTTGG TCGTATCTAT CCTCAGTCCA TCAGTCAGGA CACGCTTCTT 
GATTATAGCA GTTTGGATTT AACGGATGTC GCATTTCCGC ACCCACCGAA TCGCCCTATT
ACAACGCTCG ATCTTTCTCG CAATCAGATC AAAAGGCTGT CGATAAACTC CACCGACGCG
AATTTAATTA CACGTATTAT CCTCCATGAC AATGAAATAT CCGACCTGCC AAGCGATATT
CGTTCCTTTC GCAACCTTCA GGAATTGTAT GTCGCTGGTT GCCCTTTAAC CACCTTGCCA
ACATGGCTGG AAGAATTAAC CCATCTGCGA ATTCTTGATA TCGGTGATAC CGACATGATG
GATTGCCCTC CAGTATTACG TCGGCTACCA AACCTCTCAA CTTTGGCTTT AGCCAACTTA
CCATGGATGA AACTGCCACA CTGGTTTGGC GATTTGCCAA TCACCACCCT GTCTCTTTAT
GGTATGCCCC AATGCGATCT ATCGGTTATT GCAGAATTAA GATCACTCAA TCAGCTTTTT
CTGACCAGGA TGCACTATAC ACAAATACCA ACATGGCTAC AAGCATGTAC AAGGTTGACA
TTCCTTGATC TCAGTGATAA TCCGATCACT ACACTCCCAC CATGGCTTGG GAAATTATCC
TTAGAGACCC TTATCCTTGG ACGCATTCGA TTAGAACGGT ACCCTGATTG GGAACAATGG
AATTCGCTAA CGACGCTCGA TCTGGTCGGA TGTGAGAACG CTGATGCGGT TTTTTCAAAG
CCCTTCCCTC AATCACTTCA TACATTAATT CTTGACACCT CTACTATTAC GGCAGTTCCT
GAATGTATAC GCCTTCTTCG TTCCTTACGT GACTGTCGGC TAGCCCATAC CACGATAACC
AGTGTTCCTA CATGGTTATT TGAAGAGGTG GCACTACAGT CCCTGGATCT TTCCTATACG
CATCTTGAGT TTCCAGCCCT TACCAAGCCA TCGATGCTCA TAACATTTAT TTTTCGAGGG
GGACGTACAT CAACCTGGCC ATCCGTGTTC GATCAGATGC CGATGCTTCA GCTGTTTGAT
CTCGAGGATG CTTATTTTGA TGACCCGCTC GTCCAACCAC TGAAGACGAC CTACCATGAT
TTAAAGAATT TTACGAGTCC AAGAACGTAC TCTGGTATTC CGTTTGCACT AGCTATGCCT
AACCTTCAGA CACTGCATAT GAGTGCTCCT TGGCCCCCGA CATCCGTTGA TACGCTGCAT
ATGATGTTGG AACACTGTCC TCAACTTCAA GCGATTTCGC TTCTTGGATG GAACTTGGAT
ACCATTCCTA CCAGCATGCA ATCCCTTTCA GATCTTCGTT CTTTAAGCGT ACCGTATAAT
CAGATTACGG AAGTTCCGAT ATGGCTCCAA GGCATGACAA AGCTCCGTTC ATTGGATATA
TCGCATAATC GGCTTACGCA GATTCCAATA TGGCTCCGAG ATATGCCACA CCTTGAATCG
CTTGATCTTT CCGGGAATCC TTTACAGACG TTCCCCTCAT GGTTAAAAGA CATCCCAACG
CTCAGTGAGG TCGCCTTCGT GTTCCCACCC GCCAGCCTTC AGTGTGATCA CGTCCTTCCA
GAATTTCTGG CGGCAGGGAT TCGGCTGGAT GTCCGACATC CCCGTGATGA CCCGTAA
 
Protein sequence
MYRNPVGRIY PQSISQDTLL DYSSLDLTDV AFPHPPNRPI TTLDLSRNQI KRLSINSTDA 
NLITRIILHD NEISDLPSDI RSFRNLQELY VAGCPLTTLP TWLEELTHLR ILDIGDTDMM
DCPPVLRRLP NLSTLALANL PWMKLPHWFG DLPITTLSLY GMPQCDLSVI AELRSLNQLF
LTRMHYTQIP TWLQACTRLT FLDLSDNPIT TLPPWLGKLS LETLILGRIR LERYPDWEQW
NSLTTLDLVG CENADAVFSK PFPQSLHTLI LDTSTITAVP ECIRLLRSLR DCRLAHTTIT
SVPTWLFEEV ALQSLDLSYT HLEFPALTKP SMLITFIFRG GRTSTWPSVF DQMPMLQLFD
LEDAYFDDPL VQPLKTTYHD LKNFTSPRTY SGIPFALAMP NLQTLHMSAP WPPTSVDTLH
MMLEHCPQLQ AISLLGWNLD TIPTSMQSLS DLRSLSVPYN QITEVPIWLQ GMTKLRSLDI
SHNRLTQIPI WLRDMPHLES LDLSGNPLQT FPSWLKDIPT LSEVAFVFPP ASLQCDHVLP
EFLAAGIRLD VRHPRDDP