| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_5030 |
|---|
| Symbol | |
|---|
| ID | 5736989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009973 |
|---|
| Strand | - |
|---|
| Start bp | 40715 |
|---|
| End bp | 43885 |
|---|
| Gene Length | 3171 bp |
|---|
| Protein Length | 1056 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641282197 |
|---|
| Product | transcriptional activator domain-containing protein |
|---|
| Protein accession | YP_001547788 |
|---|
| Protein GI | 159901542 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3903] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.311949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGAC AATTACCCAT ACCCTATTTG CCGCCGGACA CTTCTGCCGC CGCCGACTTT
CGGGTGTACG TGCTTGGCAC TCCCGTCTTG CTTTGGGCCA ATACTCCCTT CTCGATTGCT
CGGCGCCAAG CCCGCGCGCT GCTGTATCGT TTGGCCTCAG ATCTGAACCC AGTGGCACGC
ACCGAGCTAG TTTACCTTTT CTGGCCCGAC ATGCCCGATC TGACCGCACG CCGCCATCTG
ACCCATCTGC TGACCCGTCT TCGCCAGGAC ATCCCCGATC CTCGCATACT CATCGCCACA
CCTGATCATG TTACCCTTGA TCCTGAACGC GTCTGGATTG ATAGCTCCGT TTTCATGCAT
GCGGTTGCCA CCACTGATCC TGAGCACCGA CTGGAAGCCC TTGATCATGC AGTAACCCTG
GTACGCGGCC CCTTTCTCCA TGGGGTGGCC CTCGCCGATG CCCCGGAATT TGAGCTGTGG
CTGGCCCAGG AACGCAGCAA CTGGGAGAAC CGCACGTTGG CTGTGCTTGA CACCCTACTT
GAGCAGGCCA CTGTGGTACG CAACTATCCG CTGGCTATCC GTACTGCCCA ACAATCCCTA
GCCTTGAACC CGTTGGCCGA AGATGTCCAT CGACACCTGA TCGGCCTATA TGCAACCATC
GGTGATCGCG GTGCTGCCGT GCGGCACTTT GAGCACTGCC GCACCTTACT TGAGCAGGAG
CTTGGTGTCA CGCCTCTACC CGAAACGTTG GCCATCTACG AGCAGGTTCG TGCGGGCCAG
AGTCCCTTTC CCTCTGAAAC GGCGGGTCAA CGAGGCCTGA TCCTAGCGGG AAACGCGGTG
ACTCACCCAG TCGATTTCCC TGCTCGTCCC GAATCAGTGA TCAACCCCGA TTCGGCGGAC
GAGGCCCCCG TCTGGGCACC TGATGTCACT GAAAAGGGCC AGATGTTGGT TACTAAACCA
TTGTATGGCC GCGATGCCGA GGTAGCGATC ATAACAACCA TGCTCGCGAG TGCGATGCCT
CGCCTGATCA CACTGAACGG TCCCGGCGGC AGTGGCAAAA CCCACCTCGC ACAGCAAATC
GCCGCCAGCG TCGATTTCCC GGATGGGGTG GTCTGGGTCG CGCTTGGATC TCTGCGCGTA
CCGGGATTAC TTCGCGATGC CATCGCCTAC GCCTGCGGGG TTCGCACCAC TGGCTGGAGC
GCAGCCAGTG CGGCTGTGGC AGATCAGCTA CATACAGCGC TCCAGCCCAA ACACATGCTT
TTGGTGCTCG ACAACGCTGA ACATCTCCTA GACGGGACAG GCGTGATCGC GGAGTTGTTG
GTGGCAGCAC CAAACCTACG GGTTCTGGTG ACCAGCAGGG TCGCATTAAA TTTGCCAGGG
GAGCAACTAG TTCCTGTGCC GCCACTGCCC GTCCCATCCC TAGCCACATT GCCACCGATC
GAGCAACTGG CGCTCCAGCC AGCCGTAGCC CTGCTGATTC ATCGCGTACG CGAACGCCAG
CCTTGGTTCA TGTTAAGTGA GGAAAATGCA GCAGATATCG CCGCCATCTG CGTGCGCTTG
GATGGACTGC CGCTGGCCCT TGAACTGGCC TCCACCCGGC TTATCACCCT TACACCAGGT
GCCGTGCTTG CACGACTGAA CCATCGCCTG ACGTTGCTCA CGCGCGGGCC ACACATTCTT
CCAGAGCGCC AGCAAACCTT ACGGGCCACG ATTGACTGGA GCCATCGATT GCTTGATCTG
TCGGCGCAGG CGATGTTTGC CAACCTAGCA GTCTTCGCCG GTGGGTGGTC ATTGGCTGCT
GCCGCAGCCG TGATGCAGCA CCAGATGCCA GCCGCTGCGC CGGTGCCTGA CGAGATCGCC
GTGTTAGATC TGATGCATGG ATTGCTTGAG CACAACATGA TTTTTTCAAT TCCGGGGGAG
GAGCCGCGTT TTGACATGTT GGATACCCTG CGCGAGTACG CCCAGGAGCA ACTGAAAGCA
CGCGGTGGTG CTGGCACGGC GGACGAGGCG CATGCCACGT TTTATCGTGA GCTCGCGCTT
CGTGCCACAC TCCACATCCA GGGCGAACAG AGTACGGCCT GGCTGACTAT GCTTGCACTG
GATCATGATA ATTTGCGCGT GGCACTGGCA TGGTTTCTCG GGCAACCCGA TGGCGGTGCC
GGCGCTATCG ATATCACTAA CATATTGCAA GTGCTTTGGC GCTGGCGCGG TGAGTACCAT
GAAGCCCGCC ATTGGATACC ACAGGTGCTT GATCACAGTC GGGGATTGGC ATCGGAGAAA
CATATCCATC TGCTCATGAT TGCTGGGAGT GCTGCTGCGT TTTATGGTGA TCGGGATACG
GCGCTGGACT GGTTCACTGA GGGTCTTGAT CTGTGCCGCG ACGTTGCAGC TCCGCTCATT
GAGTCAGATT TGCTGATCAA CATGGGGCGA ATCTATTGCT ATCGTGGAGA TTTTGTGCAC
GGCTGTGCAC TCTCTGAAGC AGCCCTCGTC CTCAGTCGTA AGACAGAAGA CCCACTGCAT
CTCGTCAGGA CGATTCGCAA CCTTGCAGCC GCGCTCTGCG GAGGATTGGT CAATATTGAA
CGTGGCATGG CCCTGTTTGA AGAAGGATTA ATCATTGCAC GTGCAACAGT CGATAGCGGT
GCCTACAGTC AGGTTACCCT AGCGATCTTC CTCATTGATT TTGGATCTTA TCTGGCGTTG
ACAAACCAGC ACACACGCGC GGCGATGCTC CTCGCCGAAG CCTTGGCGTT GGCCGAGCAG
AACGATCATG CTATCGCCAG AGTCAACGCC CTGGGAAGTT TGGGGTTTCT TGCGTTGCTG
CAGAGTGACC GCGCAACAGC GTGCCGCTAC TTTCTGGACA GCCAGCAGCT CATCAATGGA
ATCTCGGCAC CCATGAATAC AGTCATGAAT ATTGAAGGAC TCGCCGAAGT GGCTGCGGAA
AAACATCCGC GCCTGGCTAT TCAGCTGCTG GCCGCAACCA GCGCGGCACG TACGGCGCTG
GATATGCAGA TCGAACCCAT CGAACAGCGG CATCGTGCCC AAGTCCTCGC TGACTTGCGA
CACGAGCTTG GCGACGAAGA GTTCTCGATA GCATGGTATC AGGGTCAGGA CTGGACTGTA
GAGCAGGCCC TAGCAGCAGC ACGCACTGAT ACTGGAGAAA AACAAGGGTA A
|
|---|
| Protein sequence | MLRQLPIPYL PPDTSAAADF RVYVLGTPVL LWANTPFSIA RRQARALLYR LASDLNPVAR
TELVYLFWPD MPDLTARRHL THLLTRLRQD IPDPRILIAT PDHVTLDPER VWIDSSVFMH
AVATTDPEHR LEALDHAVTL VRGPFLHGVA LADAPEFELW LAQERSNWEN RTLAVLDTLL
EQATVVRNYP LAIRTAQQSL ALNPLAEDVH RHLIGLYATI GDRGAAVRHF EHCRTLLEQE
LGVTPLPETL AIYEQVRAGQ SPFPSETAGQ RGLILAGNAV THPVDFPARP ESVINPDSAD
EAPVWAPDVT EKGQMLVTKP LYGRDAEVAI ITTMLASAMP RLITLNGPGG SGKTHLAQQI
AASVDFPDGV VWVALGSLRV PGLLRDAIAY ACGVRTTGWS AASAAVADQL HTALQPKHML
LVLDNAEHLL DGTGVIAELL VAAPNLRVLV TSRVALNLPG EQLVPVPPLP VPSLATLPPI
EQLALQPAVA LLIHRVRERQ PWFMLSEENA ADIAAICVRL DGLPLALELA STRLITLTPG
AVLARLNHRL TLLTRGPHIL PERQQTLRAT IDWSHRLLDL SAQAMFANLA VFAGGWSLAA
AAAVMQHQMP AAAPVPDEIA VLDLMHGLLE HNMIFSIPGE EPRFDMLDTL REYAQEQLKA
RGGAGTADEA HATFYRELAL RATLHIQGEQ STAWLTMLAL DHDNLRVALA WFLGQPDGGA
GAIDITNILQ VLWRWRGEYH EARHWIPQVL DHSRGLASEK HIHLLMIAGS AAAFYGDRDT
ALDWFTEGLD LCRDVAAPLI ESDLLINMGR IYCYRGDFVH GCALSEAALV LSRKTEDPLH
LVRTIRNLAA ALCGGLVNIE RGMALFEEGL IIARATVDSG AYSQVTLAIF LIDFGSYLAL
TNQHTRAAML LAEALALAEQ NDHAIARVNA LGSLGFLALL QSDRATACRY FLDSQQLING
ISAPMNTVMN IEGLAEVAAE KHPRLAIQLL AATSAARTAL DMQIEPIEQR HRAQVLADLR
HELGDEEFSI AWYQGQDWTV EQALAAARTD TGEKQG
|
|---|
| |