| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4969 |
|---|
| Symbol | |
|---|
| ID | 5736805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 6304890 |
|---|
| End bp | 6306644 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641282136 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001547727 |
|---|
| Protein GI | 159901480 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.465149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACGT TTACGGAACT TGGGCTAGGC GAAGCGACGT TGCGGGCAAT TACTGAACTT
GGCTATGAAG AACCAACTCC AATCCAAGCC CAAAGTATTG GTTTGATGCT TAGTGGCAAT
GATATTATTG CCCAAGCTCA AACAGGTACC GGCAAAACCG CTGCTTTTTC GTTGCCAACG
ATCGAACGGA TTGATCCCAA AGCCATGGGT GTGCAAGCCT TGATCTTGAC CCCAACGCGC
GAATTAGCCG TCCAAGTCTC GGATGCTATT TCAGCGTATG GCAAATATTT GAATATTCGC
GCCTTGCCAG TCTATGGTGG TCAACCAATT GATCGCCAAC TTCGCGCTTT GAAGCGTGGG
GTCAATATTG TCATCGGCAC ACCTGGCCGT TTGATGGACC ACATGGAACG TGGCACGCTT
GATCTTTCGA CCGTGCGCAC TGTGGTGCTC GACGAAGCCG ACGAAATGCT CAACATGGGC
TTTGTTGATG ATATTGAATA TATTTTGGAA CGCGCTCCCA AAGATCGCCA AACCGCTTTA
TATTCAGCCA CCATGCCCGA TGAAATTGCG CGTTTGGCTC GCAAATACTT GCGCTCACCC
CAAATGGTGA CGATCGAACG CGAACAATTG ACTGTACCGC AAATTCGCCA AGTCTATTAT
GAAATTGGCG CACGCGATAA ATTTGAAGTG CTCACGCGGA TTCTTGACCT TGAAATGCCA
ACCTCGGCGA TTATTTTCTG CCGAACCAAG GCCATGGTCG ATGAGCTTGG TGAAAAATTG
TTGGCTCGTG GTTATGGCGC TGAATTGCTG CACGGCGATT TAAGCCAAGC TATGCGCGAC
CGCGTGATGA AGCGCTTCCG CGAAGAACAA GTGGAAATTT TGGTCGCAAC CGACGTTGCT
GCCCGTGGTT TGGATATTGA ACATGTCAGC CACGTGATCA ACTATGATAT TCCGCTTGAT
CCAGAAGCCT ATGTTCACCG GATTGGCCGA ACTGGCCGAG CTGGCCGTTC AGGTGTTGCT
GTAACCTTGG TAACGCCACG CGAACGCCGC CAACTGCGCA CGATCGAACG TATGACTGGT
GCTCCAATTC AACGCTTACG CTTGCCAACG ATTGCCGATG TGGTTGCCCG CCGCCGCGAA
GCATTCAAAG ATAACTTGCG TGAATTGATC GAGCAACACA ACGAACAGGG TGGTTTGGAG
CAATATTTGG TCTTGGCTGA AGAATTGGCC GAACAATATT CACCAACCGA TTTGGCCGCT
GCTGCCTTCA AGATGATGCT TGGTGAGCCA GATTTGACCG CCGAAGATCC TTTAGAAATG
GTTGAAGACG AAGCCACCTT CGATGCTCGC CGTGGTGATC GCCGCGATAG CCGCGATAAT
GGTCGCCGTG GCGATCGCCG CGACAATGGT CGCGCTGGTG AGCGACCTGG TGAGCGCGGT
GGCGATCGGG CTGCCCGTGG GCCTCGTAGC GGTGGCGATC GCAACAACGG TGGCCGCTCG
TTCCGCGAAG AAGGCATGAC CCGCTTGTTT GTAGACATTG GCCGCGAACA GGGTGTGCGC
CCAGCTGATA TTGTTGGCGC AATTGCCAAC GAATCAGGCT TGCCAGGCCG TGCAATCGGC
GCAATCGACA TTTTCGATAA CTTCACCTTT GTTGATGTGC CAGATGAGGC TGCGAACCGC
GTGTTGGCTG CCCTTGGTCG GACCCAAATT CGCGGTGTGA AAATCACCCC AACCTTGGCC
CGCCCACGTC GCTAA
|
|---|
| Protein sequence | MTTFTELGLG EATLRAITEL GYEEPTPIQA QSIGLMLSGN DIIAQAQTGT GKTAAFSLPT
IERIDPKAMG VQALILTPTR ELAVQVSDAI SAYGKYLNIR ALPVYGGQPI DRQLRALKRG
VNIVIGTPGR LMDHMERGTL DLSTVRTVVL DEADEMLNMG FVDDIEYILE RAPKDRQTAL
YSATMPDEIA RLARKYLRSP QMVTIEREQL TVPQIRQVYY EIGARDKFEV LTRILDLEMP
TSAIIFCRTK AMVDELGEKL LARGYGAELL HGDLSQAMRD RVMKRFREEQ VEILVATDVA
ARGLDIEHVS HVINYDIPLD PEAYVHRIGR TGRAGRSGVA VTLVTPRERR QLRTIERMTG
APIQRLRLPT IADVVARRRE AFKDNLRELI EQHNEQGGLE QYLVLAEELA EQYSPTDLAA
AAFKMMLGEP DLTAEDPLEM VEDEATFDAR RGDRRDSRDN GRRGDRRDNG RAGERPGERG
GDRAARGPRS GGDRNNGGRS FREEGMTRLF VDIGREQGVR PADIVGAIAN ESGLPGRAIG
AIDIFDNFTF VDVPDEAANR VLAALGRTQI RGVKITPTLA RPRR
|
|---|
| |