| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3500 |
|---|
| Symbol | |
|---|
| ID | 5735361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 4407864 |
|---|
| End bp | 4408931 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641280647 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001546264 |
|---|
| Protein GI | 159900017 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0791674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTAT ATCTCATTCG GCGCTTGTTC CAAGCGATTC TCGTCCTTAT TTTATCGTCA
GCAGTGATTT ACTCGCTGTT TGCCCTGGCT CCTGGTGGCC CACTTGAGGA GCTAACCCAA
GTTACCGACC CCAAGAATCG GCCTAGCCCC GAAGATATTC AACGTCAAAT CAAGTTGCTA
GGGGCCGATA AGCCTTGGTT CTTGTGGTAT CCAACTTGGC TCGCTGGTGA TACCTGGATG
GATAAAATTG GGTTTGAAGA ATATCAGGGC GAACGCAAGG GGATCTTGCG CTGGGATTGG
GGTACATCGT GGAAGTTTCA ACGTAATAAG CCAGTCTTGG AGATTATTGG CGATAAATTG
CCCGATACCC TGTGGTTGAT GATTTCATCA ACAATTATTT CGTTGGTGCT GGGCATTCCG
CTGGGGGTTT TCTCAGCAGT GCGCCAATAT TCTTTTTTTG ATTATGTGTT GACCACATTT
AGCTTTATTG GCTTATCACT GCCGGCCTTC TGGTTTGGTT TGTTGATTAT CGCGGTATCG
CTGTGGTTTA AACGCAATGG CTGGTTCTAC TTCCCCGCTG GCGATATTCT GGCCCTGCGT
AATTACGAGG TTCCGATTCT TGGCACGGTC GTCGCTGGCT CGTTGCTTGA TCGGGTGATG
CACTTGGTTA TGCCTGTTAC GGTGCTTTCA ATGCTCAACT TGGCCAACTG GAGCCGCTTT
ATGCGGGCGA GTATGCTTGA AGTGTTGAGC CAAGATTATG TGCGGACTGC CCGCGCTAAA
GGGGTCAAAG AACGCGTCGT GATCTACAAG CATGCCTTCC GCAATGCCTT GATTCCATTG
ATCACGATCA TCGTCTTTGC GATTCCTGGG GTGTTTGGTG GCGCACTGTT TACCGAAACA
GTCTTTAATT ATAAAGCGCT CGGCTTTACC TTTATTAGCG CTCTGAACCT CAAAGATTAT
CCTTTGGCGA TGGCCTTCTT GCTGATTTCG TCGATCTTGT TGGTGTTTGC GACGTTGCTG
GCGGATGTGC TCTATACCAT TGTTGACCCA CGAATTCGAC TTGACTAG
|
|---|
| Protein sequence | MTVYLIRRLF QAILVLILSS AVIYSLFALA PGGPLEELTQ VTDPKNRPSP EDIQRQIKLL
GADKPWFLWY PTWLAGDTWM DKIGFEEYQG ERKGILRWDW GTSWKFQRNK PVLEIIGDKL
PDTLWLMISS TIISLVLGIP LGVFSAVRQY SFFDYVLTTF SFIGLSLPAF WFGLLIIAVS
LWFKRNGWFY FPAGDILALR NYEVPILGTV VAGSLLDRVM HLVMPVTVLS MLNLANWSRF
MRASMLEVLS QDYVRTARAK GVKERVVIYK HAFRNALIPL ITIIVFAIPG VFGGALFTET
VFNYKALGFT FISALNLKDY PLAMAFLLIS SILLVFATLL ADVLYTIVDP RIRLD
|
|---|
| |