| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3344 |
|---|
| Symbol | |
|---|
| ID | 5735214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 4215732 |
|---|
| End bp | 4217276 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641280491 |
|---|
| Product | PT repeat-containing protein |
|---|
| Protein accession | YP_001546108 |
|---|
| Protein GI | 159899861 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5401] Spore germination protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGTG AGGCTCACGA CATCCCAGTG CCCCAAGCCT CGTTTTGTCT AAGTAGCAAC
CATGTGCGTT GCCCATTATA TGCAGGTGAA GATCTGCCGG TTGCGCAGGT TATCAGCACG
CCTACGCCAG TTGCGGTGGG TGGTTGGCGC GGCTGGCTGG CTGGTTTATC GACCCGCGAT
CGCCGCATTT ATGCCACCTT GGTGGGCCTA CTTGGCTTAA TTATTGTGGC CTATGCGATT
AGCGGCGTTG TTTTATTTAG CAACCCCGAT AACCCTGCCA CGCCTAGCGC TACCTCGCAA
GTGCTTCAGC CAACATCCGA TAGCCCAACA TTAACGGTTT CACCATCGCC AAATGCCTTT
GCCACAGCAG CGGTTCGTCA AACTCAAACA GCCGAAGTTA TTGCTCAAAC CACTACCGTC
ACTCCCTCGG TCTCTGCTAC GTCATCGGCT TCTGCAACCA CTCAGGTGAT TCTTGCATCG
CCAACCTTTG TTATTGTACC GCCAACTGAA GATGTGATTG TCGCCTCTGC TACTCCTAGC
ATTCCGTTTG CCACCGATCT CCCAACCTTT GAGCCAACGT TATCGCCAAT TGCGACAACT
GCCGTGCCAA CGCTTGAACC AACCGCAGAA CCGACTGTTG AACCAACTCT TGAGCCAACG
CTCGAACCAA CAGTTGAGCC GACTGTCGAG CCAACGCCTG AACCGATCCC TGAGCCAACT
GCTCAGCCGA CCGAGGAAAC TGGCGGTCGC GAGGTTAATC AATTAACCTT GTTTTTTGCC
GATAGCACTG GCCAAGTGTT AGTGCCAGTC TCGCGCCAGA TTGCGGCAAC TCGTCAGTCA
CGGACTGCCG CAATCCAACA GTTAATTCAA GGTGCACGCA GCGATTTGCG TAGTTTGTTG
CCCAGCGATA CCCAATTACT TGGGCTACGC TTGAATAATG GCATTGCTAC CGCTAATTTT
AACCGTATCC CGACGTTTGG CAATTCAAGC CTCGAAGATT TGGGTTTGCG TTCGATTGTG
TTGGCCTTGA CTGAGCAACC AGAGGTTAAG CAGGTGCAAA TTCAAGTCCA AGGCCAAAAT
TTAGGTGGCC TGCGCTATCG TCCCAATGTC AACCCCGATA ATCCGCAGGG TTTAAATGGT
CAGTTTAACA CAACTTCGTT CTTGCCGTTA TATTTTCAGC AAAGTAGTGG CCGTTGGGTG
CGGGTGATGC GGCTTGTGCC AAGCACCAAA ACCGAGGCCC GCGCTACCGT CAATGAGCTG
ATTCGCGGAG CTGGCCGTTA TAGTCATGTT GTTAGTAGTG CCATCCCGAG CGCCAGCCAA
GTACGGCGTT TGGTGATTGT TGATGGGGTT GCTCAACTTG ATCTTAGCGC TGAATTCAGC
CAAACCAGCA ATCCGCAGGC GGCGGTTGAT GCCTTGGTCT TGGCGTTAAC TTCGTTCAGT
AGTGTGCAAC AGGTACAGAT TACCGTCGAA GGCCAATCGC TCAGCAGCAT TTGGGGCGCA
ACATTCAGCA ATCCTTTCGT TCGCCCACAA CTTAACCCTG AATAG
|
|---|
| Protein sequence | MTGEAHDIPV PQASFCLSSN HVRCPLYAGE DLPVAQVIST PTPVAVGGWR GWLAGLSTRD
RRIYATLVGL LGLIIVAYAI SGVVLFSNPD NPATPSATSQ VLQPTSDSPT LTVSPSPNAF
ATAAVRQTQT AEVIAQTTTV TPSVSATSSA SATTQVILAS PTFVIVPPTE DVIVASATPS
IPFATDLPTF EPTLSPIATT AVPTLEPTAE PTVEPTLEPT LEPTVEPTVE PTPEPIPEPT
AQPTEETGGR EVNQLTLFFA DSTGQVLVPV SRQIAATRQS RTAAIQQLIQ GARSDLRSLL
PSDTQLLGLR LNNGIATANF NRIPTFGNSS LEDLGLRSIV LALTEQPEVK QVQIQVQGQN
LGGLRYRPNV NPDNPQGLNG QFNTTSFLPL YFQQSSGRWV RVMRLVPSTK TEARATVNEL
IRGAGRYSHV VSSAIPSASQ VRRLVIVDGV AQLDLSAEFS QTSNPQAAVD ALVLALTSFS
SVQQVQITVE GQSLSSIWGA TFSNPFVRPQ LNPE
|
|---|
| |