Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_2538 |
Symbol | |
ID | 5734416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | - |
Start bp | 3244886 |
End bp | 3252676 |
Gene Length | 7791 bp |
Protein Length | 2596 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641279678 |
Product | TPR repeat-containing protein |
Protein accession | YP_001545304 |
Protein GI | 159899057 |
COG category | [S] Function unknown |
COG ID | [COG5427] Uncharacterized membrane protein |
TIGRFAM ID | [TIGR03662] Chlor_Arch_YYY domain |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACGTT TCGCTGCGCT GCGTGCCTTG GGGCGACGCT TCCCCGATTT GATCAGTTTG CTCTGCTTGT TGGGTATTCT CTGGATGGCT TGGGGCGTTC GCTCGATTCA TCGAGCCGAT TGGGATGGCT ATGCCCCGTT GATCCACCCC GATGAGTATT ATTTAAAGGA TGCGATCACG CCCAATTTGC GCGTGCCCGA TTCGTTTTGG AGTTATCTCA CCACTGAATG CGAAATTGTG CTGAACGATC AGGGTGTGGC CCAACTCAAA AATGCGCGTA ACCCTGAAGA ACCTGATGTT AGCAAACAAC GCCCTACTGC AACCAGCGGC TGTAACTCAC TCAACCCGCG TACTGTCGAT CGTGGCTATG TCTATGGCTC ATTGCCTGTG GCAACCGTGC GCTACTTAAC CGAAAAATTC TACCCTGAAA TTGAACCAGA CCAACTGACC AGCCGCACAA TTGCTGTAGT TGGCCGTAGT GTTTCCTCAA TTGCCGATTT GATTTCAATC GTCATCTTGT TTTTGCTGGG CCGCACGCTC AACAGCCGCC GGATTGGCTT GTTGGCGGGT TTTTGTTTTG CTTGGTCGCC AGCACTGATT CAACATGCGC ACTTTTTTGT GGTCGATGGT CAGGCGGCGA TGTATGGCCT GTTGACTTTA TATGCTAGCA CTCGTTTAGC TCAATCGCGG CGCTGGTGGA GTTCCCTGCT CAACACCATA TTTGCTGGCG CAGCGTTGGC TTTGGCCGTC TCCTGCAAAA TCACGCTTGC GCCACTTGGC GGGGTTATTG CAATTGCCGC GATGGTGGCC TATTGGCATA ATCCGGCTTA TTTGCGCGGT GATCATTCGC CAGCAGCAAT CTTTCAACGG CTCTTGTGGA GCGGCATTTA TGCCTTGCCA TTTGCTGTCC TCGCCTTTTT AGTAATGTGG TTCACCCTGC GATTTAGCAT GCCCGATGCC TTCAATGGTT TTTGGTTTGA AGAACGCTTT GTCAATGCAA TTGCGAATGC TAGTGCAACA TCATCGGGCG AGGTCGATGC CCCATCATCA CATCAATGGG CAGGCCGTAG CAACTACACC TACGAATTGA CCAACATGAT TCGTTGGGGC ATGGGCGTAC CTTTGGGTGT GGCGGCTTGG CTGGGCTGGC TAGCCTTTGG GATTGCGCTG TGGCGCTCAG AATCGCGTCA GCGCTTGTTG GGGCTTTTGC CAATCTGGCT CTGGACAGGA ATTTACTTCT TCTGGCAGGG CGGCTTAATG ATCAAGCCGA TGCGCTATTT GCTGCCGATT TATGGCCCAT TGATTTTATT TGCGGCATGG GGCTTGATTA GCTTGGTCGA TTGGGCGCGG CGCGAAGGCA CACCATTGCT CTTCCGCAAA GTGCCGTTGC ATGGCTTAGC AGTTGGCCTA ACCAGCATGG TGGCGATTGT AACCCTGCTT TGGGGCTGGG GTTTTAGCCG CATTTATGAT CGCCCACATA CCCGCACTCA GGCCTCAGCA TGGGCACACG CCAACATTCC TCCAGGCAGC ACCCACACCT CAGATTCGTG GGATATTGGC ATTCCAGGCA TGGAAAATTG GATCTGGACT GATATCCAAT TGCCAATTGT TAATGAAAAT GATGCTGGCT CGATTGAGCA AATTCTGCAA GTTGCCAACC AAGCCAACTA TTTGGCTTTT ACCTCAAATC GTGCCTACGA TTCGCTTGAT CAATTGCCGA TGCGTTTTCC GGCCACGCTC AATTTCTTCA AAGGCATTTT TGATGGCACG CTGGGCTATG AAAAAGTTGC CGATTTCACA TCCTACCCCT CATTTTTGGG CATTCGGATT GCCGATGATC ACGCCACCGA AGATTGGAGC GTCTACGATC ATCCGCGGGT GACGATTTGG AAGCGCACTG AACGCTGGAA TATTGACGCG GCACGGCAGC AAATTTTGGC CGATGTGAAT GTTGATGAAA TTTATAAACT ACGGCCCAAA GTTGCCACGC CCATGCCAAC CATGCTTCAG CAAACTGTGG CCGAATGGCG CGAACAGTTG ACTTCTGGCT CATGGGCTTG GGTTTTTGAA GGGGTTGCTA ATAGTGCTCC ATTGATCTTT TGGGTGCTGG CGCTTGAACT CTTGGGTTTA GCAGCGTTTG GCTTGCTCTG GCGCTTGAAA TTGCCGTTGC CTGATCGCGG TTTGGGCATG GCACGGCTAG TCGGCTTATT TGCCCTCGCT TTGATCGCGT GGCTCCCAGC GGCTTGGCAT TGGTGGTCGT TCAATCGCTT CTGGATCGCC GGAGTATATC TGGTATTGGT GGCGTTGGGC AGCCTCAGTT TGCTACGTTC GCGCCATGAG TTACGCTTGT GGTGGCAAAC CCGCCGCGCG GCAATTCTCA CCTCGCAAGC GATTTATTTA GCTGGCTTTG CAATTTTGCT AACCATTCGC TATCTCAACC CCGATTTGTG GCATCCAGGC ATGGGCGGCG AAAAGCCCAT GAATTTGGCC TACCTCACGG CCACGCTCAA ATCGGTGCAA TTCCCGCCGT ATGACCCATG GTTTGCGGGC GGCTATATGA ATTACTACTA TTGGGGCTAT GTGCTGATGG GCACGCCAAT GAAATTGTTG GCGATTCGGC CTGAGGTTGG CTTTAATCTA GCATTAATCA GCTTGTTTGC AATGACGGCC CAATTAAGTG GTAGTTTTGG CTATAATTTG CTTTCAACGC TTGGGCGGGC TGCCAAAAAA ATCGAACGCC GTGCTTGTTT TACGGCAGTT GGCGCTGCGG TAGCCTTGAT GCTCTTGGGC AATTTAGTTC AGCCTGTCTT CTATTTCAAC AGTGCGCGGG TTTTGGGCAA TAGCGAATTG AGTTGGTCGA ATCCTGAACA ATCGAGCCAA GGCATTTGGC TTGAGGGTGG TTCGCCCGTG GCTGATGCCG CTGCGGGCTT TGCTAAACGG CTCGATGGCG AATCGTTCAA TTTGCGCCCC GAATGGCCGT ATTGGAACGC CACGCGAGTA ATTCCGCCCA GCACAATCAG CGAATTCCCC TTCTTCTCAT TTTTATATGG TGATCTGCAT GCCCACATTA TTGGGCTTTC ACTGCTCGTC TTGCTATTGC TCGGCTTAGT TGGCTTGTAC AAAGCACCAA CGATTTCAGG CCGAGCGTTG GCTGGTTGGA GCATAGCGCT AGGCATTTTG GTCGGCGCAC TCAAAGCCAC CAATGTTTGG GATTATCCGT TGAGCCTCGC ATTATCCGCT GTTGCCTTGT TGGTGGTCGG CTGGCAACAA AGCCGCACTG TGGCTTGGCC CAAGCGTTGG CTGTGGATTG TGCTCCCGCC AATTGCCCTG TTTGTGGCGA TGACCGTGGT TTGGTCGCCA TTCAACCGCT ATTTAGCAAC CGGCGATTAT GGCAAACCCC AATTGCTGAC TAACGACCAA CGCATGAGCA TTCGCGAATT TACCGTGCTC TATGGCCTGT GGTTCTGGAT TTTGATTCCA TGGATGCTGC TGCTCGCGCG ACGGATTTGG GGCATTCGCA GCACCTTGAT TGGAGTTGGC TCAACTCTGA TTTGGATGGC CGTGATTAGT TTGCTGCAAG ATCGCGTGAC CCTGCTCGAT ATGAGCGTTG AGCCAAGTAA AATTGCGCTG TTGATTAATA ATTTATTCAA ACAGGCAATT GCCCAACGCG CGGCATCGAT CGTGATTCTT TTGCCCTTGA CGGCATGGAG TATTGCCCTG TTGTGGAGCG CCTTGGCTGG CCGCACCCGA CGGCGCGAAG TTGTGCCGTT GGCCTTGACC AGTGCTGGCA TTTTGCTCTT GCTCTTGACC GAAACGATTG TGCTGCCTGG TGCTGGCCGC ATGAATGTGG TCTTTAAGTT TGGCTACGAA GCCTGGGCAC TCTTGGCGTT GGCTGCTGCC AGCGTTGTGC CATTGACCTT GAGCGCCTTC CGTAGCGTTG TACGTTCGGC ATTGGCAGCT CCGTTGCGCA TTTCGTGGGC AACCGTTACC AGTTTGTTGG TGCTGGGTGC TTTGGTCTAT CCAATTACTG CCACCCAAGC CAAGGTTGCG GATCGCTATG TGGCCGACGC GCCGCGTGGG CTTGATGGCA TGGCTTGGAT GGAAGGCGCG ACGTGGGTCG AAAATCGCGA AATTGCGATT AAAGATGATG CGGCGGCAAT TCGTTGGATG CGAGCGAACA TTGAGGGCAC GCCAACCGTG CTCGAAGCCA GTACCTCAGC CTATCGTTGG AACAGCCGAA TTGCGACATG GACTGGCCTG CCAACCTTGA TTGGTTGGGA TGGGCATCAG AATCAGCAAC GTGCGCCCGC CGAAGCAGCA GGCATTATCG CCAACCGCAA AAATATCATT CAGCAAATTT ATACCGCGTT TGACCCTAAT ACCGCCCAAA ATTACCTTGA TCGCTATGGC GTGAGCGTGA TTTACCTTGG TGGCTTGGAA CGAGCAGTCT ATGGCGATTT GTTGCCAGTT TTCGAGCAAC TCAAAGCTTC GGGGCGCTGG CGCGTGGCTT ATGATAGCGG CACAACCCAA ATCTACCTGC GCACTGATGC GAAAGTGCCA GCGCCAACCG CCTTGCCACC AGTCGAGTTG CCAGGTATTC CGCCCGATAA TCCAGTTGCG GCAATTAGCA TGGCCGAAAA GCCCTTGCCC CAAGCGACGG TTGACAATAA AGTCGAAACC CCACGGGTCG ATGGCTTCGC CGATTGGGCT TGGATTAACC AAAATCAAGC GGCGGCAGTG CTGTTGTGGT TGCTGTTTTT TGAAGTTGTC GGTTTGTTGG CTTTTCCGAT TGTGGCGCAA GCCTTGCGTT CGTCGTTGGC AGCGGCTTGG AGCGCCAGCA AAATCGCGGG TATTTTGCTG CTTGGTTGGC TGATTTGGTT GCCAACCAGC TTGGGCTTTT GGCAATGGAC GCGACTGAGC GTGATTGTTG GTTTGGCAAT GTTGGCGGCG TTGGCGCTGG CGGCTTGGTA TTTTGGCGCA GCTCAACGCA TTCGCCAAGC GTGGCGGCAA CAACGGCGAG CAATTATCAT CAGCGAAGTG CTGTTTATCA GCTTATTTGC GGTCTGGACC TTGGTTCGGG CTGCCAACCC TGATTTGTGG CATCCCTACT GGGGCGGCGA AAAGCCCTTT GAATTTGGCT TCTTGAATGC GGTGCTGCGT TCGCCCAATA TGCCACCGCT TGATCCCTTC TATTCGCAAG GCACGATCAA CTACTATTAC TATGGCCTGT ATCTGATGGC CTTGCCGATG AAACTCTTTG GCCTCAACTC GGCGATTGGC TTCAATTTGG CGGTTGCCAC GGTTGGCGCA TTGATCGGGA TTGGCGCGTG GGCAGTGGGC TTGGTGGTTA CGCGGCGGCT CAAAGTCGCG GCGATGGCCT TGGTTGCGGT GGCTTTGCTC GGTAATTTAG CAGGCGTATT GCCAATTGGC ACCTCAACCG GAATTGGCGG GGTGGTGCGA GCTTGGCAGG CCTGCGAGTT GGGCGGCGAA GGTCGCGAAA CCGCTTGTGC TCCGCTCGAT GGCGACAGCA ACTTAGCTGC GATGATCAGC GATGCGATGG CCAATGGCAC AAGCGAAAAC TTCACGCGGC GCTTAGCTGG CGGCGTGCCA TGGTTCTGGG GGCCAAGTCG GGTCACGGTT AGCGATGGCC TGAACACGAT TAATGAATTT CCGCTGTGGA GCGTGATTTT TGCCGATTTG CACCCGCACC TGATTGCTTT GCCAATTACC TTGCTGGTGG TGGCCTTGGC GTGGGAAGTG AGCCGACGAA GACGCTTGCG CCGACAATTG CCCGCCTTTG GTTTGGCGGC TTTGGCAGTT GGTTCGCTGG CGGCAGCCAA TGCCTGGGAT GTGCCAACCT ATGGTTTGGT GCTGATTGTT GGCTTGATGG CGCGTGGTTG GCAAGCACCG CAACGCCGTT GGTGGGCGAC GCTGGGCTAT AGTTTGCTGG GCGTGGCGAC GGTTGCGCTT GGTTTGCTGC TGTATGCACC ATTCTTGGGC AGCTACAAAG CTCCGGTTGG CGGGGTTTGG CCGATTCGGG TGGGCACGGC TTTAGTGCCA TGGTTGGCGA TTTATGGCCT CTTTTTGCTG ATGATCACAA CCTGGTTGTT GTTGCCGCTC AAACGAGCCG AGCCAACGCC ATTCTGGGAT TGGGTTAAGG CGACACGCGG GCGCTGGCTG ATTGGTTATG GGTTGGCCGC CGCCGCCGTG ATCGTCTATT TCTTAACCCG CAGCGATGCC GCCAAAAGCG CGATTACTGA GCCTTCGGTC TTGCCGGATC TAGCGACGAT TTACAAACCA ATTTTCAGCG CTGGCATTCC GGTGCGTTTG CTGATTGGCC TGCTGTTGGC GGGCTTAATT CGACGCTTTA TCAACCGTGT GGCCTCGCCC TCAGCACGTT GGGCGATTGT GCTAGGCTTG GTTGGCGGAT TGGTGGCCTT GGGTATTGAG CTGATTTTCA TCCGCGATCA CCTTGCGCCA GGCTCGTGGG ACGGCGGCCC GGGCGATTCT GAGCGCATGA ACACAGTCTT CAAATTTGGC TATCAAGTTT GGGTCTTGTG GGCGTTGAGT GCGGCCTTGC TTTTGCCGCA TATTGCCTCA GCTTTACGTA ACTCGCGGGT TGCCAAATAT AGCTGGCAAA CGGCGGTTAG TGTTGGGGTG GTATTGGCGC TGTTCTTCCC AATTTTTGGC ACACTCAGCC GTGTTGGTAT GCGCTTCGAT AAACCCTTGC AAGGCTTGAC CCTCGATGGT TTGGCCTATA TGCAAACTGC CGAATATAGC GTCAACAATG GTGTGGTCAA TTTGGCCGAC GATTTAACTG CGATTCGCTG GATCACCGAA AACATCACTG GCACCGAAAT TTTGCTGCAA TCGGAGCAAG AATTTTATCG GGCTTTTGGG GTACGGATCA CCGCCAACAC TGGTTTGCCA ACCGTGATCA GCGCCTTGCA TGCTGGTGAG CAACGGCCTG GCCCATTGGT TGATCAACGC ATCCGCGATG TGATGGAGAT GTATAGTAGC CTTGATGTGT TGCGCACTCA ATGGTTGCTC AATAAATATG GCGTAGATTA TGTGTATGTT GGCCAGATTG AGCGTTTGCG CGACCCGATG GGCGTTGATA AATTTGTAAC CATGGCTGGG GTGCAGCAAG TTTATCAAAA CAATAGTGTT ACGATTTATA AAACTACACC GCAACTACGC GAATTGGCGA TGCAATGGCG TGATGGAGTT GTACCAGCGC CAGTTGTGCC GAATACGCCA GTTGATCAGG CGGGTAACCA AGTTGAAGCA GCGGTAGCCT TGTATGAGAG CGACCCTAAC AATGCTGGTT ATGCTTTCGA GGCAGGCAAG CAATTGTGGC AAGCGGGGCA GGCTGATCGC GCGGCGGCGA TTTTGGGTCG TGCTGCCGAT GTTCACCCCA ACGATATTGG CTTGCACCAT CTTTTGGGCG ATGTATTGCT CTCGTTGAAA CGCTACGATC AAGTGGTATT GGCCTATGAA CAGGCCTATA ATGCTGGTCC AACCCCGCAA AACCAAACCA AACTTGGTCA AGGCTATTTT GCTTGGGCCG AGCTTGACCG CACCAAACTT GATGCAGCGG CGGCACAATT TAGTGCAGCG ATTATTGCCG ATAGCCAATT TGCCGACCCA CACTACCATC TGGCCGAAGT CTATCGTTTG CAAGGCAATA ACGCCGAAGC TCGCCGCGAA TACGAAACCT ATTTGAGTAT TGCCCCGCCC GAGGGCTTGT GGGTAGGTTC GGCGCAGGAG CGCTTGAAGA ACCTGCCATA G
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Protein sequence | MPRFAALRAL GRRFPDLISL LCLLGILWMA WGVRSIHRAD WDGYAPLIHP DEYYLKDAIT PNLRVPDSFW SYLTTECEIV LNDQGVAQLK NARNPEEPDV SKQRPTATSG CNSLNPRTVD RGYVYGSLPV ATVRYLTEKF YPEIEPDQLT SRTIAVVGRS VSSIADLISI VILFLLGRTL NSRRIGLLAG FCFAWSPALI QHAHFFVVDG QAAMYGLLTL YASTRLAQSR RWWSSLLNTI FAGAALALAV SCKITLAPLG GVIAIAAMVA YWHNPAYLRG DHSPAAIFQR LLWSGIYALP FAVLAFLVMW FTLRFSMPDA FNGFWFEERF VNAIANASAT SSGEVDAPSS HQWAGRSNYT YELTNMIRWG MGVPLGVAAW LGWLAFGIAL WRSESRQRLL GLLPIWLWTG IYFFWQGGLM IKPMRYLLPI YGPLILFAAW GLISLVDWAR REGTPLLFRK VPLHGLAVGL TSMVAIVTLL WGWGFSRIYD RPHTRTQASA WAHANIPPGS THTSDSWDIG IPGMENWIWT DIQLPIVNEN DAGSIEQILQ VANQANYLAF TSNRAYDSLD QLPMRFPATL NFFKGIFDGT LGYEKVADFT SYPSFLGIRI ADDHATEDWS VYDHPRVTIW KRTERWNIDA ARQQILADVN VDEIYKLRPK VATPMPTMLQ QTVAEWREQL TSGSWAWVFE GVANSAPLIF WVLALELLGL AAFGLLWRLK LPLPDRGLGM ARLVGLFALA LIAWLPAAWH WWSFNRFWIA GVYLVLVALG SLSLLRSRHE LRLWWQTRRA AILTSQAIYL AGFAILLTIR YLNPDLWHPG MGGEKPMNLA YLTATLKSVQ FPPYDPWFAG GYMNYYYWGY VLMGTPMKLL AIRPEVGFNL ALISLFAMTA QLSGSFGYNL LSTLGRAAKK IERRACFTAV GAAVALMLLG NLVQPVFYFN SARVLGNSEL SWSNPEQSSQ GIWLEGGSPV ADAAAGFAKR LDGESFNLRP EWPYWNATRV IPPSTISEFP FFSFLYGDLH AHIIGLSLLV LLLLGLVGLY KAPTISGRAL AGWSIALGIL VGALKATNVW DYPLSLALSA VALLVVGWQQ SRTVAWPKRW LWIVLPPIAL FVAMTVVWSP FNRYLATGDY GKPQLLTNDQ RMSIREFTVL YGLWFWILIP WMLLLARRIW GIRSTLIGVG STLIWMAVIS LLQDRVTLLD MSVEPSKIAL LINNLFKQAI AQRAASIVIL LPLTAWSIAL LWSALAGRTR RREVVPLALT SAGILLLLLT ETIVLPGAGR MNVVFKFGYE AWALLALAAA SVVPLTLSAF RSVVRSALAA PLRISWATVT SLLVLGALVY PITATQAKVA DRYVADAPRG LDGMAWMEGA TWVENREIAI KDDAAAIRWM RANIEGTPTV LEASTSAYRW NSRIATWTGL PTLIGWDGHQ NQQRAPAEAA GIIANRKNII QQIYTAFDPN TAQNYLDRYG VSVIYLGGLE RAVYGDLLPV FEQLKASGRW RVAYDSGTTQ IYLRTDAKVP APTALPPVEL PGIPPDNPVA AISMAEKPLP QATVDNKVET PRVDGFADWA WINQNQAAAV LLWLLFFEVV GLLAFPIVAQ ALRSSLAAAW SASKIAGILL LGWLIWLPTS LGFWQWTRLS VIVGLAMLAA LALAAWYFGA AQRIRQAWRQ QRRAIIISEV LFISLFAVWT LVRAANPDLW HPYWGGEKPF EFGFLNAVLR SPNMPPLDPF YSQGTINYYY YGLYLMALPM KLFGLNSAIG FNLAVATVGA LIGIGAWAVG LVVTRRLKVA AMALVAVALL GNLAGVLPIG TSTGIGGVVR AWQACELGGE GRETACAPLD GDSNLAAMIS DAMANGTSEN FTRRLAGGVP WFWGPSRVTV SDGLNTINEF PLWSVIFADL HPHLIALPIT LLVVALAWEV SRRRRLRRQL PAFGLAALAV GSLAAANAWD VPTYGLVLIV GLMARGWQAP QRRWWATLGY SLLGVATVAL GLLLYAPFLG SYKAPVGGVW PIRVGTALVP WLAIYGLFLL MITTWLLLPL KRAEPTPFWD WVKATRGRWL IGYGLAAAAV IVYFLTRSDA AKSAITEPSV LPDLATIYKP IFSAGIPVRL LIGLLLAGLI RRFINRVASP SARWAIVLGL VGGLVALGIE LIFIRDHLAP GSWDGGPGDS ERMNTVFKFG YQVWVLWALS AALLLPHIAS ALRNSRVAKY SWQTAVSVGV VLALFFPIFG TLSRVGMRFD KPLQGLTLDG LAYMQTAEYS VNNGVVNLAD DLTAIRWITE NITGTEILLQ SEQEFYRAFG VRITANTGLP TVISALHAGE QRPGPLVDQR IRDVMEMYSS LDVLRTQWLL NKYGVDYVYV GQIERLRDPM GVDKFVTMAG VQQVYQNNSV TIYKTTPQLR ELAMQWRDGV VPAPVVPNTP VDQAGNQVEA AVALYESDPN NAGYAFEAGK QLWQAGQADR AAAILGRAAD VHPNDIGLHH LLGDVLLSLK RYDQVVLAYE QAYNAGPTPQ NQTKLGQGYF AWAELDRTKL DAAAAQFSAA IIADSQFADP HYHLAEVYRL QGNNAEARRE YETYLSIAPP EGLWVGSAQE RLKNLP
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