| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2056 |
|---|
| Symbol | |
|---|
| ID | 5733944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 2566000 |
|---|
| End bp | 2567679 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641279198 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001544825 |
|---|
| Protein GI | 159898578 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.809448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCGT CTTCGTTTGA TCCGTTCGAT GGTCGCCTGT ATCCACGGCG TACCCCATCC
CAGACCATGC TTGAGTATCA GCATTTAGAT CTTGCGGTTG TGCCATCGCC GCTGTGCCCG
CAGCGTCCGA TTACCTCTCT TGATCTTTCC CATAATCCGC TGGTCACATG GCCGAGCGAA
ACGGCTGCAT TGCCATCCCT CACCCGATTA AATCTTGCCC ATACCACGCT CACTCAGCTT
CCCGACCATC TTCGCGCGTG TACGCAGCTG GAAGAACTCT ATCTGTCAGG GTGTCCGCTG
GAATGTCTGC CGTCGTGGCT TAGCGAACTT CCCCACCTGC GCGTGCTTGA TCTGTCGCAT
ACGCGCCTCA CCATGGTGCC TGATGTCGTG CGTTCGCTGC CATCCCTCCA GGTGCTCAGT
CTTTCCGGGC TTCCCCTTGC AGCCCTGCCG CCGTGGCTCG ATGCGTGCGC CCTCCACATG
CTGTTCCTGC GGTCATTGAC GGCATGTGAC TTAAGCAGGG TGCGGGCTTG TTCGACGCTC
GAATACCTTG ATCTCGGACA CCTGGACTTG ACCCAGGTTC CCGACTGGAT TCAGGGATTA
CCCCGATTAC AGCAGCTGGA TCTCTCGGAC AATCCGATCA CGGAGCTTCC CGCGTGGGTT
GGCGATCTGC CGCTCACGAC GCTCCATCTT GCCCAGACGC GACTTCAGCA CCGTCCCGAT
TGGGAGGCAT GGACGATGCT GCGTGACCTG AACCTCAGCG GAATGACCCA TGATCCTGCC
GTCTTTGCGG GGGCATTTCC CGCATCCTTG ACAAGCCTGA AGCTGTACGA CACGGCCTTA
ACCGCAATCC CTCCCTTCGT TCGCAACCTC CAGCATCTTG AAACGCTCCG GTTTGACAAC
AATGCATCCT TGTCGCTTCC AGCATGGCTC CTGGAGGAGT GCCCATTAAA AACGCTCGAA
CTGATCAACA CCCACATCAC CGAAATTGCC CCGGTCGCGC AGCCCATCGC CTTAGAACAC
CTGATCATCA CGGCTGGCCG TCTGCCCACG TGGCCGACGC TCCTTGACTA TACGCCACAC
CTGCGGACAC TCGATTTGTC GGAAACGCGG ATCGTCGATG CCACCTGTCC ATCGCCGTGT
GTGCTTCCCC GATTAGTAAC GCTCGATCTT CAAGGCGATG CGATCGCGCA GCTGCTCCCG
CAGCTGGTCG TTCCCATGCT GCAACGATTG ACCATCGCCA ACTGTTGGGA CGCAGACCTA
ACCGCCGTGC TTCAGCAGGT CGGTCAGGTG AAGAATCTTG CCATCTTAAA CTGTTCAGGG
ACGGTACCGG AGGGGCTGCG ATCATGGACC CACCTCCAAA CACTGAATAT GGGTCATAAT
GGGTTGCGTG AGCTACCACG TTGGATCAGC GAATTGGAAC ACCTTGAATC GCTCAACCTC
GCCTATAATG ATCTTGCACG ACTCCCGCTC GCCGTGCGGG AGCTTTCGCA GCTACATACG
CTCGATATCA CGGCGAATCC GCTGCGGAGC TTTCCTGATT GGCTCCATAC CATGCCACAG
CTGCATGCTA TCGAGTTTCA ATTTCCACCG GATGACCTCA CCCTGCATGA TCATCAATTG
CAATTTCTGG CCGCTGGAGT GCGCTGCAAT GTCCGTTCAC CGCGACCACG GAAAGCTTAA
|
|---|
| Protein sequence | MMPSSFDPFD GRLYPRRTPS QTMLEYQHLD LAVVPSPLCP QRPITSLDLS HNPLVTWPSE
TAALPSLTRL NLAHTTLTQL PDHLRACTQL EELYLSGCPL ECLPSWLSEL PHLRVLDLSH
TRLTMVPDVV RSLPSLQVLS LSGLPLAALP PWLDACALHM LFLRSLTACD LSRVRACSTL
EYLDLGHLDL TQVPDWIQGL PRLQQLDLSD NPITELPAWV GDLPLTTLHL AQTRLQHRPD
WEAWTMLRDL NLSGMTHDPA VFAGAFPASL TSLKLYDTAL TAIPPFVRNL QHLETLRFDN
NASLSLPAWL LEECPLKTLE LINTHITEIA PVAQPIALEH LIITAGRLPT WPTLLDYTPH
LRTLDLSETR IVDATCPSPC VLPRLVTLDL QGDAIAQLLP QLVVPMLQRL TIANCWDADL
TAVLQQVGQV KNLAILNCSG TVPEGLRSWT HLQTLNMGHN GLRELPRWIS ELEHLESLNL
AYNDLARLPL AVRELSQLHT LDITANPLRS FPDWLHTMPQ LHAIEFQFPP DDLTLHDHQL
QFLAAGVRCN VRSPRPRKA
|
|---|
| |