| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1177 |
|---|
| Symbol | |
|---|
| ID | 5733070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 1349957 |
|---|
| End bp | 1351756 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641278317 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001543953 |
|---|
| Protein GI | 159897706 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAT TACCAAAACC AAAAAACCTT CAGCGTGCTG AGGGAAGCTA TGCTTTACCC
AAAATCTGGC AGATTAGCCT ACCTAGTGGG CTTGATCAGC GGGTTACGGC CAGTTTGGCG
GCACTGGGCG AATATCAAAT GGTTGAGCAA GCTGCCAATT TGCTGCTAAC GCTTGATTCA
AGCATCGTTC ATGCCGATGG CTATCGTTTG CAGATTGCTG CTGATGGCGT GCAGATTGTG
GCGCAAACTG CGGCAGGCTT GTTTTATGGC CTGCAAACGC TGCGCCAAAT TCAACAACAA
TCAGCTGAGC AATTGCCGTA TCTATTAATT GATGATGCCC CTGATTTTGT GGTGCGTGGC
TTTATGCTCG ATATTAGCCG CGATAAAGTG CCAACCATGG CCACGCTCTA TGCGCTAATC
GACGAATTAG CTAGCTGGAA AATTAACCAA ATTCAGCTGT ATATTGAGCA TACGTTTGCT
TACCAAAACC ACCCCACAGT ATGGGCTGAT GCTTCGCCGT TGACTGCCGA GGAAGTACGG
GCGCTCGATG ATTTCTGTCT TGAACGCTTT ATCGAATTAG TGCCCAACCA AAATTGTTTT
GGCCATATGC GACGTTGGCT GACCAAACCA GCCTATCGCG ATTTGGCCGA ATGCCCCGAT
GGCTGCGACA CTGGCGACCC CGATTGGGGC TATTTTGAAG AACCCTTCAC CTTAGCTCCC
GAACACCCAG GCAGCATCGA ATTAGTGCGT AGCATGCTCG ACGAACTATT GCCCAACTTC
CGCACTCGCA CACTCAACGT TGGCTGCGAC GAAACGGTCG AATTGGGCTT GGGGGCAAGT
GCAGCAGCAG TTGCTGAGCG CGGCAAAGGT CGGGTTTATC TCGAATTTTT GCAAAAGCTC
TACCACGAAG CCCATTCACG CGGCTATGTG ATGCAATTCT GGAGCGATAT TATTTTGCAT
TATCCAGAAT TGGTCAGCGA ATTGCCCCGC GATGCCGAGG TGTTGATTTG GGGCTACGAG
TCGCATCATC CCTTTGAAGA ACAAGCCGCC ACCATTGCCA AAGCGGGCTT GCCCTTCTAC
GTTTGCCCAG GCACGTCAAG CTGGAACACC GTCGCAGGCC GCACCACCAA CGCCTTGGAA
AATATCGCGA GCGCCGCCAA ACATGGCTTG AACCATGGTG CAAAAGGCTT TTTGATGACC
GATTGGGGCG ATAACGGCCA CTGGCAACCA CTCGTGACCA GCTATCTTGG CTTGGCAATC
GGCGCTGCTC GGGCTTGGAA TGCGCTCGCT GAGCTTGATG TGGTTGCCTT GCTCGATACG
GTGGTTTTTG CCGATAGCAA CAAGGTTTTG GGCAATTTGG TCTATCAATT GGGCGATGTC
TATCGCGCTG TACCACCGTT ATTGCACAAT ACCTCGTCGT TATTCCGCAT TTTGCAGGCC
AACCCAGCCG CAATTGCCGA ATTAAACCTT GATCGCAAAA ATTTGCATAA TGCCGATGAG
ATTTTGCTGC AACTGCGCAA CGACTTGCAA ACCATCAAAC CCCAACGCGC TGATGGCGAG
CTTTGCCAAG TTGAATTAGC TTGGGCGATC GATTTATTGC GCCATGCGGT GCAACGCGGT
TTGTGGGTGC TTGATCAACA GCCAAGCGAA ACCGCTAGCA AATTGCAACC AGAAATCGAT
GCCTTGATCG AACGCTTCCA ACAAGTTTGG CTGAGCCGCA ATCGCCCCGG TGGCTTGCAA
GATAGCCTTA AACATTTTGC AAGCTTGCGC GATAGCTATG GCGAGGTGCG TTATGCCTGA
|
|---|
| Protein sequence | MQLLPKPKNL QRAEGSYALP KIWQISLPSG LDQRVTASLA ALGEYQMVEQ AANLLLTLDS
SIVHADGYRL QIAADGVQIV AQTAAGLFYG LQTLRQIQQQ SAEQLPYLLI DDAPDFVVRG
FMLDISRDKV PTMATLYALI DELASWKINQ IQLYIEHTFA YQNHPTVWAD ASPLTAEEVR
ALDDFCLERF IELVPNQNCF GHMRRWLTKP AYRDLAECPD GCDTGDPDWG YFEEPFTLAP
EHPGSIELVR SMLDELLPNF RTRTLNVGCD ETVELGLGAS AAAVAERGKG RVYLEFLQKL
YHEAHSRGYV MQFWSDIILH YPELVSELPR DAEVLIWGYE SHHPFEEQAA TIAKAGLPFY
VCPGTSSWNT VAGRTTNALE NIASAAKHGL NHGAKGFLMT DWGDNGHWQP LVTSYLGLAI
GAARAWNALA ELDVVALLDT VVFADSNKVL GNLVYQLGDV YRAVPPLLHN TSSLFRILQA
NPAAIAELNL DRKNLHNADE ILLQLRNDLQ TIKPQRADGE LCQVELAWAI DLLRHAVQRG
LWVLDQQPSE TASKLQPEID ALIERFQQVW LSRNRPGGLQ DSLKHFASLR DSYGEVRYA
|
|---|
| |