| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4006 |
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| Symbol | |
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| ID | 5714535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 70272 |
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| End bp | 71276 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276918 |
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| Product | integrase family protein |
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| Protein accession | YP_001542214 |
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| Protein GI | 159046544 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGC TCGCCCCCGA CCTTTCAGCC TTCCTGCAAA CCCATCTTCC CCATGAATGC
GGCGCAAGCC GACATACCAT CGCAGCCTAT GCCTGTGCGT TCACCCTCTT GCTGCGGTTT
GTCACAGGGC GGGTCAAGCG AACCCCATCG GAACTTTTCA TTGAAGACCT GGACATTCAG
ACGATCAGGG CGTTCCTCGA ACATATCGAA GAAGGACGCG CCAATTCCGT CCGGTCCCGC
AATGCGCGAC TGGCGGCGAT TAAATCGTTT TTCCGTTTCG TCGAACATCG CCAACCGGCC
TGCCTTGAGC AGGCGATGAT GATCCGGGCC ATGCCGACCA AGCGAACAGA CGCCAAGCTG
ATCGATTATC TTACAAAGGA AGAAGTCCGC GCCTTGCTTG CCGCGCCGAA CCGCCACACG
CCAGGCGGAT TGCGGGACCG CGCCATGCTG CATCTGACCT ATGCCGCAGG GTTGAGAGCG
TCCGAACTTC TGGCTGTGCG GATGGACGAT TTTCCCGACG GGTCGTTTTC CAACGTACGG
ATATTGGGCA AGGGGCGCCG GGAGCGTGTG CTGCCGCTCT GGAAGGAGAC TCAATGTGCC
ATTCGCGCGT GGTTGGCCGT CAGGCCCGGT CGAGTAGGCC CGGAACTGTT CCTGAACCGT
GATGGGCGCC GAATGACGCG GGACGGATTT GCATATCGGC TAAGGCAACA TGTGGCGACA
GCCGAGCGCT CGACGCCATC GATTGCCGCA AAGCAGGTCA CTCCGCATGT GTTGCGGCAC
AGCTGCGCCA TGCACACGCT TCAGGCCACC GGTGATATCC GCAAGGTCGC GCTCTGGCTT
GGCCATGCCA GCATCCAGAC GACCGAGATG TATCTGCGCG CGGACCCGAC CGAGAAGCTA
GCGCTTCTGG AGGCGCACCA CGCACCTCTG ATCCAACCAG GCAAGTTCCG GGAGCCGTCG
GACAAGCTGA TGCAGATCCT AGCCGTCGCC GCGCAACGTG CTTGA
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| Protein sequence | MTPLAPDLSA FLQTHLPHEC GASRHTIAAY ACAFTLLLRF VTGRVKRTPS ELFIEDLDIQ
TIRAFLEHIE EGRANSVRSR NARLAAIKSF FRFVEHRQPA CLEQAMMIRA MPTKRTDAKL
IDYLTKEEVR ALLAAPNRHT PGGLRDRAML HLTYAAGLRA SELLAVRMDD FPDGSFSNVR
ILGKGRRERV LPLWKETQCA IRAWLAVRPG RVGPELFLNR DGRRMTRDGF AYRLRQHVAT
AERSTPSIAA KQVTPHVLRH SCAMHTLQAT GDIRKVALWL GHASIQTTEM YLRADPTEKL
ALLEAHHAPL IQPGKFREPS DKLMQILAVA AQRA
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