| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4005 |
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| Symbol | |
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| ID | 5714534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 69364 |
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| End bp | 70275 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276917 |
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| Product | integrase family protein |
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| Protein accession | YP_001542213 |
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| Protein GI | 159046543 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACATC ACCATGTAGA CCGCTTCGTC CAACTCAACC GCACACTCGG AAAGAAGTTC
GCCGCACAGG AGACATCCTT GCGCGCCTTC GCGGATTTCG CTGCGGAGCG ATCCATCACG
CATCTGACGG CAGCGCTGAT ACTGGAATGG GCCGGCGGCG CCGCGACGCC TTATGCTGCG
CAGGCGCGGT TTGATCGCGC CCGCGCATTT GCGGTGTTCC TGCACGCGGA AGATTCACGG
CACGAGATAC CTGCGATGGG GCTGCTGGGT CGGTCACGAC GGAGGCGGCC CGCTCCCCAT
ATTCTGACGC GGGACCAAAT CAGTCGGATC ATGCATGAAG CGCTTCTGGT GCCCGGCCTG
ACACCGATCA GCCCGCTGAC TTATCATAAC CTGTTCGGGC TGCTCGCTTC GACGGGCTTG
CGGATTTCGG AGGCATTGTC CCTTCAGTGC GACGATCTTA CGGCGGAGGG CCTCATGGTC
CGGAGCGGCA AGTTTGGCAA GAGTCGTCTC GTGCCAATAC ATTTTTCGAC CCGTGCCGCG
CTGGAACGAT ATCTCGAAGC CCGCGCGGCC GTGCGTAACG CGAACGACGA TCTCTTCGTT
CTTGGTCATG GTCATGCCCC GACAAAAACA CGGGCCCATG TGGTCTTCGT TCGGATCGTC
CGGAAGCTTG GGTACCGCAA TCCGACAGGG CCCGGCCCCC GGCTTCACGA TCTGCGCCAC
ACCTTCGCCG TGCGATCCCT TGAGGCCTGT GGGAACAACC CGCAGGCAGT GTTGCGGCAC
ATGAAGGCTC TGAGCACCTA CCTCGGCCAT GTCGATATTG CCAACACCTA CTGGTACCTT
GAGGCTACGC CGGTTCTTCT GAAGATGATT GCGGCAACCG CCGAGGAGAC CTGGATCGGA
GGTGCGGCAT GA
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| Protein sequence | MIHHHVDRFV QLNRTLGKKF AAQETSLRAF ADFAAERSIT HLTAALILEW AGGAATPYAA
QARFDRARAF AVFLHAEDSR HEIPAMGLLG RSRRRRPAPH ILTRDQISRI MHEALLVPGL
TPISPLTYHN LFGLLASTGL RISEALSLQC DDLTAEGLMV RSGKFGKSRL VPIHFSTRAA
LERYLEARAA VRNANDDLFV LGHGHAPTKT RAHVVFVRIV RKLGYRNPTG PGPRLHDLRH
TFAVRSLEAC GNNPQAVLRH MKALSTYLGH VDIANTYWYL EATPVLLKMI AATAEETWIG
GAA
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