Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3981 |
Symbol | |
ID | 5714510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009957 |
Strand | + |
Start bp | 39853 |
End bp | 40548 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641276894 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_001542190 |
Protein GI | 159046520 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.813501 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTGTTTA TAAGATCGCT TATTTTTGTC ATTGCCCTGT TGCCCGGCCT CGCCTCTGCC GAAGCGATCC CGCGCGGTGG TCCAAATGAC AGCCGCGTGC GCTTGGCCAC CTACCAAGAG GGCCAAGTCT ATCGTCTCAA TGTCTCGCTC ACCCACGTGA CCACCATCGA GTTCGGCGAG GGCGAAAGCA TCCGCTCGAT CATCGCGGGC GACACGGAAG GGTTTGAGAT CGACGGTGTC CCGGGCGGTC AGGCCTTCGC GATCAAGCCT GTGGCGCGCG GGGTGCATAC CAATGTGACA GTCTATACGA ACCGCCGGAG CTACTACTTC AACGTCGAGG AGGTCCGCAG CCCGACCTTC TACGTGGTGC AGTTCCGCTA CCCTGACGAC GCTGCGCGCC CGACCCGGGC CATCGCCGCC CAAGCGCCGA ACTACAATTA CGGCGCCAGC GCGAGGACCG AGTTCACGCC AACGCGCATC TGGGATGACG GGACGTTCAC TTATTTCGCC TTTCCAAGAA ACGCCCCTGT GCCAGCGATC TTCCGCTACG CGGGCGGCCG TGAACGCACG GTCAACACGC AAACTCCTGA AGACGGCGTG ATCCGCGTCA GCGGCGTGAA CCGCCAATGG GTCCTGCGAC TGGGCGAAGA GGTGGTCTGC ATCGAGGCGA TCCCGCCCGC GGAGGCCACC TCATGA
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Protein sequence | MLFIRSLIFV IALLPGLASA EAIPRGGPND SRVRLATYQE GQVYRLNVSL THVTTIEFGE GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTNRRSYYF NVEEVRSPTF YVVQFRYPDD AARPTRAIAA QAPNYNYGAS ARTEFTPTRI WDDGTFTYFA FPRNAPVPAI FRYAGGRERT VNTQTPEDGV IRVSGVNRQW VLRLGEEVVC IEAIPPAEAT S
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