Gene Dshi_3981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3981 
Symbol 
ID5714510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009957 
Strand
Start bp39853 
End bp40548 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content62% 
IMG OID641276894 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_001542190 
Protein GI159046520 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.813501 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTGTTTA TAAGATCGCT TATTTTTGTC ATTGCCCTGT TGCCCGGCCT CGCCTCTGCC 
GAAGCGATCC CGCGCGGTGG TCCAAATGAC AGCCGCGTGC GCTTGGCCAC CTACCAAGAG
GGCCAAGTCT ATCGTCTCAA TGTCTCGCTC ACCCACGTGA CCACCATCGA GTTCGGCGAG
GGCGAAAGCA TCCGCTCGAT CATCGCGGGC GACACGGAAG GGTTTGAGAT CGACGGTGTC
CCGGGCGGTC AGGCCTTCGC GATCAAGCCT GTGGCGCGCG GGGTGCATAC CAATGTGACA
GTCTATACGA ACCGCCGGAG CTACTACTTC AACGTCGAGG AGGTCCGCAG CCCGACCTTC
TACGTGGTGC AGTTCCGCTA CCCTGACGAC GCTGCGCGCC CGACCCGGGC CATCGCCGCC
CAAGCGCCGA ACTACAATTA CGGCGCCAGC GCGAGGACCG AGTTCACGCC AACGCGCATC
TGGGATGACG GGACGTTCAC TTATTTCGCC TTTCCAAGAA ACGCCCCTGT GCCAGCGATC
TTCCGCTACG CGGGCGGCCG TGAACGCACG GTCAACACGC AAACTCCTGA AGACGGCGTG
ATCCGCGTCA GCGGCGTGAA CCGCCAATGG GTCCTGCGAC TGGGCGAAGA GGTGGTCTGC
ATCGAGGCGA TCCCGCCCGC GGAGGCCACC TCATGA
 
Protein sequence
MLFIRSLIFV IALLPGLASA EAIPRGGPND SRVRLATYQE GQVYRLNVSL THVTTIEFGE 
GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTNRRSYYF NVEEVRSPTF
YVVQFRYPDD AARPTRAIAA QAPNYNYGAS ARTEFTPTRI WDDGTFTYFA FPRNAPVPAI
FRYAGGRERT VNTQTPEDGV IRVSGVNRQW VLRLGEEVVC IEAIPPAEAT S