| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3902 |
|---|
| Symbol | |
|---|
| ID | 5714431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009956 |
|---|
| Strand | - |
|---|
| Start bp | 128472 |
|---|
| End bp | 129650 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641276815 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001542111 |
|---|
| Protein GI | 159046440 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.538028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGAT CCAACCCCTC AAAGGCTGAT CACGGCCGCA AATGGCCGTG GCTCGTGCTG
GTCGCGACAC TTCTGCTGCT GGCCGGAGGC GGGTACTGGT GGCTGTCGCA GCCAGCGGAG
CGTCGGTCTG GTGGCGATGC AACGCAGTCG CCGCTTGTGC GCGCGACTAC ACTGGAGGCC
ACCGATCACG TGATCCTGCA TCAAACTGGC TTCGTCAGAG CCTCAGATGC CGTGGAGGTC
GTCCCGCAGA TCACCGAGCG GATCGTGGAA ATCGCGCCCT CTTTCGACGT CGGGCAGCGT
GTGGTGCAGG GTACGCTTTT GATCAGGCTG GACGCCAGGG TGGCCGAGGC CAATCTGCGC
ACCGCCGAGG CCCGGCTCGC GCAAGCCGAG GCCGCGCTGG AAGAGACCCG CATCAGCCTT
GAGCGGCAGC AGAAACTTCA CGTCGAGCAG GTCATCAGCG AAGCCGCGCT GGATGATGCG
CAAGTGGCGC AGTCCCGAGC CGAGGCAGAT GTCGCGATGG CCGAAGCCGA GTTGGCCCGC
GCCGAGATCG CGCTCAACGA CACGCAGCTG CGCGCGCCGT TCGATGCCAT CGTCACCCGC
GAAAACGCGT CACTGGGGCA ACTGGTGCAG GCCGGCAACA GCATCGGGCA ACTTGTCGCC
ACGGACCATG CCGAAGTGCG CATGGGACTT TTGCCTTCGG ACCTCTCGGT TCTGGGGCAG
GCCGCCGCGG CGCGCGGCCT CTCGGTAACG GTCAGCGATC CGGCGACGGG CCGCACCCTG
CGCACCGGCA AAGTCGGTGC CATCGTTCCG GCCATCGACA CGGCCACTCG CACGGTGACG
TTGATCGTGG ATATCCCCGA CCCTTTCGCC GAAGGCGAGT CCAGCGTGCG CATTGGCGAG
TTGGTCGAAT TGTCCCTGCG CGTTCCCTTG GGCGCGCCCC CGGCGCTGCG CGTGGCGGCC
GAGGCACTTA AGGGCGGCGA CACGCTCTGG CGCATCTCGG ACGGGCAGCT CGAGAGACGC
GATGTCTACG TGCTGTCCCG TACCGACAGT ACTGTGACCC TGCGCGGCGA GGCGCTTTCG
CAAGGCGACA AGGTTCTGCT CAGCGATCTG GCCGCGCCCG CGGATGGTGA CACAGTCCGC
GTGGCTGCCG ATGCGATGCA GGTCGCTCGG GGCGATTGA
|
|---|
| Protein sequence | MTRSNPSKAD HGRKWPWLVL VATLLLLAGG GYWWLSQPAE RRSGGDATQS PLVRATTLEA
TDHVILHQTG FVRASDAVEV VPQITERIVE IAPSFDVGQR VVQGTLLIRL DARVAEANLR
TAEARLAQAE AALEETRISL ERQQKLHVEQ VISEAALDDA QVAQSRAEAD VAMAEAELAR
AEIALNDTQL RAPFDAIVTR ENASLGQLVQ AGNSIGQLVA TDHAEVRMGL LPSDLSVLGQ
AAAARGLSVT VSDPATGRTL RTGKVGAIVP AIDTATRTVT LIVDIPDPFA EGESSVRIGE
LVELSLRVPL GAPPALRVAA EALKGGDTLW RISDGQLERR DVYVLSRTDS TVTLRGEALS
QGDKVLLSDL AAPADGDTVR VAADAMQVAR GD
|
|---|
| |