| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3898 |
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| Symbol | |
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| ID | 5714427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 121824 |
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| End bp | 123404 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276811 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001542107 |
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| Protein GI | 159046436 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.237178 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGAC GCGGGCCGTG GCCCGAAAAC CCCGTCATTT ATCAGGTCTA CCCCCGGTCG
TTCCTTGACA CGACCGGGAC GGGGGAAGGC GATCTGCCGG GGGTGACCCG GCAGCTCGAT
TACATTGCCG GCCTCGGGGT GGACGGCATC TGGCTTTCGC CCTTCTATCC CTCGCCGTTC
TGCGACGGGG GGTATGACAT TGCCGATCAT TGCGCCGTCG ACCGGCGGTT CGGCACCCTC
GACGATTTCG ATGCGCTGGT GGCGCGGGCC CATGATCTGG ACCTGCGTGT GATGATCGAT
CTGGTGCTCA ACCACACGTC GGACACCCAT GACTGGTTCG CAAAATCGCT GGCCCGTGAA
GAAGGCTTCG AGGATGTCTA CATCTGGGCG GACCCGTGCA AGGACGGCAG CCCGCCCTCG
AACTGGCTGT CGTTTTTCGG AGAGGCCGCT TGGCGCTGGC ACCCGCAACG TGCGCAATAC
TGCCTGCACA AGTTTCTGCC CTGTCAGCCC TGCCTGAACC ATTACAACGA CCGCGTGCAC
GAACGGCTGA ACCGGATCAC GCGGTTCTGG CGCGACCGTG GCGTCGATGG CTTCCGCTAT
GACGCGGTAA CGAGCTTTTT CTATGACCCC GGGTTTCGCG ACAATCCCCC CGCGGCCGAG
GCCGAAGCGG CTCTGATCCC CGGGCCATCC AACAATCCAT ATACCTTCCA GGAGCATATT
CACGACGTGC TGCCCAACGA ATGCGCTGCC TTCGCGGAAA CCCTGCGCGA GATGGCAGGC
CCCGACGCCT ACCTTCTGGG GGAGATCAAC AACGGCCCCC GTTCGGTCGA AGTCACGTGC
AAGTTCACCG GCCCCGATCG ACTTGACGCC GGCTATGCGA TCGACTTGCC GGAACGCGGG
CCCAGCACGG AGGTACTGCG CGACCTTCTC ACCCGGCTGG AGGATGCTGA AGGATGGACC
TGGTGGCTCA ACAGCCATGA CCAGAAACGC GCGGTCTCGT CCTTCGGCGA TGGCGGGGCA
GCGGATGCGA AGATGCTCGC AGCGTTCCTT TGCGCGCTGC CCGGCCCCCT CTTGCTGTTT
CAGGGCGAGG AACTGGGGCA GCCACAGGCA GAGCTCGAAA AGGTCGAGCT GACCGATCCT
TATGACCTGA TGTATTGGCC CGACTCGGTG GGTCGCAACG GCGCCCGCGC GCCCATGGCC
TGGGACGACA CGCAGCCCGC ATGCGGCTTC AGCAAAGCGG TGCCGTGGCT ACCTATGGCG
CGGGCGGAAC AGGGCGGCGT GGCACAGCAG GAGGCCGACC CGGCCTCGGT TCTCGCCTTT
TACCGCGATG CACTTGCCCG GCGGCGTGAC CTGGGGCTTG CCGAGGCCAC GATGGAACTC
GAAGACGCGC CTGATGCCTG CATTCGGTTC CGGCTGCGCG TTGGGACGCT CGTTGTGCAG
GTGGCCGCCA ACATGTCCGG CGCGCCACAA GACCTCGCAC CCAGACAGGG TGCAAAACGG
ATCTTGCAGA CCAAGCCCCC CGCGCCGGGC AGCAACCTTC CGCCCCGCAG CGCTGCCTGG
TGGCTGTTGG AGAAAGGCTA G
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| Protein sequence | MPRRGPWPEN PVIYQVYPRS FLDTTGTGEG DLPGVTRQLD YIAGLGVDGI WLSPFYPSPF
CDGGYDIADH CAVDRRFGTL DDFDALVARA HDLDLRVMID LVLNHTSDTH DWFAKSLARE
EGFEDVYIWA DPCKDGSPPS NWLSFFGEAA WRWHPQRAQY CLHKFLPCQP CLNHYNDRVH
ERLNRITRFW RDRGVDGFRY DAVTSFFYDP GFRDNPPAAE AEAALIPGPS NNPYTFQEHI
HDVLPNECAA FAETLREMAG PDAYLLGEIN NGPRSVEVTC KFTGPDRLDA GYAIDLPERG
PSTEVLRDLL TRLEDAEGWT WWLNSHDQKR AVSSFGDGGA ADAKMLAAFL CALPGPLLLF
QGEELGQPQA ELEKVELTDP YDLMYWPDSV GRNGARAPMA WDDTQPACGF SKAVPWLPMA
RAEQGGVAQQ EADPASVLAF YRDALARRRD LGLAEATMEL EDAPDACIRF RLRVGTLVVQ
VAANMSGAPQ DLAPRQGAKR ILQTKPPAPG SNLPPRSAAW WLLEKG
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