| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3884 |
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| Symbol | |
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| ID | 5714413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 106635 |
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| End bp | 108044 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641276797 |
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| Product | multi anti extrusion protein MatE |
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| Protein accession | YP_001542093 |
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| Protein GI | 159046422 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.316697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCC GCGACACCGA CATGACCCAA GGGTCCGTGG GCGGCCTGCT CTGGCGCGTC
AGTGCGCCAA TGTCTCTCGG CATTCTGGGC GTCCTCATGG TGGGGCTCGC GGACGCCTTT
TTTCTCGCGC GCGTGGGCGA GGTCGAACTG GCCGCTGTCG GCTTCGTCTA TCCGGTCATC
GTGGCCGTCA GCGCCTTTTC CATCGGGATG AGCGCGGGCG CGAACACCGT CCTGTCGCAA
GCCATCGGCC GCACCGAAAG CGGCAACAGC CTGTCGTGCC GGGCCCTCCA CGCGGTCGGT
TTCGGCGCCC TGATCGGCCT CGGCGTCGGG TCCGCCCTCT GGCTGGTCGC GCCGGTCCTG
TTCACGGCCC TCGGGGCCAG GGGCGAAGTA CACGCGGCCA TTCTGGCCTA CCTGCCCTGG
TGGGCCGCGA GCTTTCCGAT CCTCGTGGTC ACGATGATCC TGAACGCGGC GTTTCGCGCG
GGGGGCGACG GGCTGACCCC ATCGGCACTG ATGGTTGCGA CTGCGGTGGT CAACATCGCG
ATGACACCGC TCTTGGTGTT CGGCATCGGC ACGATCGAGG GGCTGGGCAT GGCCGGTGCC
GGGATCGCGA CCCTCGCGGC GCGCATGCTC GTTGGCGTTC TGGCACTGGG TATAGCCGTT
CGGCGCGGCA CGATCGCCTT CGGCGCGCAC ACCGCCAGGG GCTTCACCCG ATCCGTGCGC
GACATCGCCG CCATCGGCCT GCCCGCCGCC GCATCCCGGG CCGTCAATCC GGCGGGTATG
GCGCTCGTGA CGGCCGCCGC CGCGACACTG GGCGATGCGG CGGTCGCAGG CTTCGGCGCC
GCTGCACGGG TGCAGGCCCT TTGCCTCGTG CCGTTCTTCG CACTGTCAAC GGGCCTTGCG
CCGATCATCG GCCAGGCCTG GGGCGCCGAC ATGCAGGGCC GCGCCCGCCA TGCGCTGCGC
CTTTCGGCAG GTTTCGCCTT GGGCTACGGC CTTTGCGCGG CAATAGTCCT CTGGATTCTG
GCGGATCCTA TCGCACAGCT GATGACCGAC GACGGCACGG CCGCCTCCTA TACCGCGCAA
TACCTGACCA TCGTCGGGTG GAGCCTTGGG GGATACGGCC TGGTGGTGAC GGTGAACGCG
GCTCTGACCG CACGGTCGAA ACCCGGATGG GCGCTAGGGC TCAGCCTGAC GCGGATCGGC
GTGATCTACG TGCCACTCGC ATGGCTCGGT GCCCTCACCC TCGGCTTCAC CGGCATCCTT
CTGGCCGCGG TCGCGGCAAA CGTCATCGCC GCATGGCTCG GGATGGTATT TGCCCAGGCC
AACAGCCTCC TAGCTCTGCG CGCCTTGCCC ATCCGCGCCC CCAGCGACCG GCTCGCACAC
CTCAGGAGGA ACCGCCATGC CCGGGGATAA
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| Protein sequence | MSSRDTDMTQ GSVGGLLWRV SAPMSLGILG VLMVGLADAF FLARVGEVEL AAVGFVYPVI
VAVSAFSIGM SAGANTVLSQ AIGRTESGNS LSCRALHAVG FGALIGLGVG SALWLVAPVL
FTALGARGEV HAAILAYLPW WAASFPILVV TMILNAAFRA GGDGLTPSAL MVATAVVNIA
MTPLLVFGIG TIEGLGMAGA GIATLAARML VGVLALGIAV RRGTIAFGAH TARGFTRSVR
DIAAIGLPAA ASRAVNPAGM ALVTAAAATL GDAAVAGFGA AARVQALCLV PFFALSTGLA
PIIGQAWGAD MQGRARHALR LSAGFALGYG LCAAIVLWIL ADPIAQLMTD DGTAASYTAQ
YLTIVGWSLG GYGLVVTVNA ALTARSKPGW ALGLSLTRIG VIYVPLAWLG ALTLGFTGIL
LAAVAANVIA AWLGMVFAQA NSLLALRALP IRAPSDRLAH LRRNRHARG
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