| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3866 |
|---|
| Symbol | |
|---|
| ID | 5714395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009956 |
|---|
| Strand | - |
|---|
| Start bp | 75905 |
|---|
| End bp | 79813 |
|---|
| Gene Length | 3909 bp |
|---|
| Protein Length | 1302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641276779 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001542075 |
|---|
| Protein GI | 159046404 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.806044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA ACGCCGACAG CATGCAGCGC GACCGCACGG ACCTGGAGGC CTCCGGGCTC
TTCGACCCGG CATGGTACCT GGAAACATAC CCGGATGTGG CGCAACTGGG CATGGACCCG
CTGGAGCATT TCCTGTGGCT GGGCGCCCGG CTCAATCGCA GCCCCGGACC GACTTTCGAT
GCGGCCGCCT ACCGGGCCGA TTACGCGGAC GTGGCCCGGG CCGATTACAA TCCGGTGCTG
CATTACATCC GCTACGGCCG CCCCGAGGGC CGCAAGGCCC GCGCGCCGGG GCTCACCATA
CCGCCCCTGG CCGAGAGCGC CGGGGCAAGC GCCCCCTTCA GACGGCTGAC CGGCCACCGG
GCCCGCCGCC CGGGACACCC GACCGTGCTG CTGGTGGCAC ATATCGTGGG CCACCAGCTC
TACGGCTCCG AACGCAGCCT GCTCGACATG CTCGACGGGT TGGCGGCGAT GGATGCCAAC
GTGATCGTCG CCGTGCCCAG CACCCGCAAC AAGGCCTATA TCGAGCTGCT GCGCGCCCGC
GCCTGTGCGG TCAGCGTGCT GTCCTATGGC TGGTGGCGGG CGGGCACGGC GCCCGACGAA
ACCGTCATCG CCACCTTCGC CCGGGTGATC ACGGAAGAAC GTATCGACAT CGTCCATGCC
AACACGATCA TGCTGCGCGA GCCACTGATC GCGGCCCGGC GCCTGGGGCT GCCGGCCGTG
GTGCAGGCGC GCGAGCTGAT CCGTCACGAT GCCAAGCTGC TGGAGCTCAT CGGGCTCAGC
GCCGACGAGA TCATCGCGGC GCTCTGGGAG AATTGCGATG TCATGATCGC CAATTCCCGG
GCGACCGCGG CCTGTTTCGA CACCGAAACC CGCCGCTCCG CCGTGGTCTA CAACACCGCC
GACATGACCG CGCTGCAGGC GCTGCCCCCG CCCCCGGCCG AAGCCCCCCT GCGGGTCGGC
ATGGTCAGCT CCAATGTTCC CAAGAAGGGG CTGGCGGATT TTGCCGAGGT CGCCCGTCTG
GTGGCCGCCG AACTGCCCGA CGCGGAATTC CTGCTGATCG GCCCGCAACA CGAACATACC
GAGGCGATCG AGGCCCGGAT CGCCGACGGC TCCCTGCCGC GCAGCCTCAG GGTCGCGGGC
TATCGCGACA CCCCGGCCGA GGCCATGGCC GAGCTCGACC TGGTGCTCAG CCTGTCGCAT
TTCCAGGAAA GCTTCGGGCG CACCGTGCTG GAGGCCATGG CCGCAGGCCG GCCGGTCATC
GTCTATGACC ATGGCGCCCC GCCGGAACTG GTGGTGTCGA GCAAGACCGG CCAAGTGGTC
CCCTTCGGCG ACATCCAGGC CGTGGCCGAC CAGGTCCTGG CCTATGGCCG CGACCGCAAA
CGGCTCTTGG TGGACGGGCT GCGGGCGGCC GACCACGCCG AGACCACCTT TGGGCGCACC
GCCTATAACG CGGCCATGGC GGCGGCCTAT GCGCCGCTGC TGCAGGAGCT GGCCCGGGAT
GCCCACCGCC CCGAGCAGAT GGTGCTGCGC GCGCGCGACC TGCCGGTGAA GATCCCACGC
GACACCCTCA AGGTCGCCTA TTTCTGCTGG CACTTCCCGG TGCCCTCGGA AACCTTCGTG
CTCAACGAGT TGCGCATCCT CAAGGCGCAG GGCATCGACG TGACGGTGTT TTGCCGGGAC
TCCCCCTACC CCGATTTCAC GCCGGATTTC GACATCACCT GGGAGCAGGT CCACGATGCC
GACCACCTGG CCCGGCGGCT CACCGAGACC GGGCGCGACG TGGTCCACGG CCATTTCGTC
TATCCCACGG TCACCGAGAT GGTCTGGCCC GCGGCACGCA TCGCGAACAT CCCCTTCACC
TGCATCGCCC ATGCCCAGGA CATCTTCCGC TACCGCAACG CGGTGGCCAA CCGGATCGAC
GAGATCAGCG CCGATCCCCT CTGCCGGCAG ATCTTCACCC TGTCGCGCTT CCACCGGCAA
TACCTGGTGG ACCGCGGCGT GCGCCCCGAG AAGGTGACCA TCAATTCCAA CTGCATCGAC
CCGGAGCTGT TCTCGGGCGG CAAGATCCCC GACCGGCCGG CCCGCCGCAC CCGATCCGTT
GCCGCGGTCT CGCGCTTTGC CGACAAGAAG GGGCTGGAGG TGCTGGTGCG CGCCGGCAAG
CTGCTGGAAG ACGACGGGAT CACCATCAAT ATCCACGGCT ACGGCCCGCT GGAGGATCTC
TACCGCCAGA TCATCGCCGA GCAGGAGATC ACCAATGTCA CCATCCACGG CCCCGTGGAG
GGTCGCGCGG CGCTGCTGGA GGTGTTCCGC ACCCATGATC TGTTCGCCGT GCCCTCGGTG
CGCGCGCTGG ACGGGGACAT GGACGGCATC CCCACCACCC TGATGGAGGC GATGGCCGCC
GGCCTGCCGG TTCTGACCAC GCCCGTCGCG GGCATTCCCG ACCTGGTGCG CGACGGGATC
ACCGGCATGC TGTCGGAAGA TGCCACCCCC GAGGCGCTGG CCGCCAAGAT CCGCGAATTC
TACGCCCTGC CCGAGATCGC CGTGCAGGTG ATGATCGAGG ATGCCGAGGC CCTGCTGCGG
CGCAACCATA ACGGCCCGGA TCTCGTGAAC ACGCTCCTGC GCTTCTGGGC GGGCGAGACC
ATCGACCTGA TGATCGTGTC CTGGAACAAC CTCGCCCAGA CCCGCGAGGT GATCCGGCGG
CTCTACGAAT ATACCGACCT GCCCTTCCAC CTCATTGTCT GCGACAATGG CTCGGACCCG
CCGGCGCTGG CGCACCTGCT GTCGGTCTAT GCGGCGCGCA CGAATTTCAC CCTGATCCTG
AACCGCGAGA ACGCCTTCGT CGGCCCCGGC ACCAACAAGT GCATCGCCCA AGGCGACTCC
GACTACATGA TCTATGTCTG CGGCAAGGAA GGCATGACCA CCCGCCACGG CTGGGAGAAA
TCCTTCGTCA CCTACATGGA CGCCCACCCC CGGGTGGGCC AGGCCGGCAC CCTGTGCTAC
TCGCCCAGCT ATCTCTTCGG GCGCGACTAC CCCGAGGGGG TGGCGCTGTT CCCGGATTTC
CGCAACCCGG GCTTTGCCGC CGACAATCCC GACCGGCCGT TCTCTCACGT CCAGGGCGGG
TTCTTCGTCA TCCGGCGCGC CACCTATGAC GAGATCGGCG GGTTTTCCGA CGCGGTCCCC
CACAGCTACA CGGATGTGGA GTTTTCCTAT TACGTGGAAA GCTGCGGCTG GGAGCTTGGC
ACGGTGCCCG GGCTGATGGC GCTGTTCAAC AAGACCCGGC CCGGGCTGGA GGCGCGGGTG
GACGAACATC ACGGCGCGTT GCATCCGCCC AATCTCGACG ATCTGCCCTG GCTCGACCGG
ATCGCCCGGC GCGAGGTGCG CCACTGCAAC ATGTGCGGCC ACCAGGCGCC CGCCTTCGAG
GGCGGCGATG CCGAGGCACG CTGCGCCGGG TGCGGCTCGG ACCGCCGCGC GCGCAGCCTG
CACCGGGTGC TGGCCGAGAC CATCCTGCTC TATCGCCGCC TGCCGGGGCT GGGGGTGAAC
CTGCCCGCGC CGCTGCAGGG TTTCTGGTCG GACCAGTTCC AGGGCCCGAT GCTGCCCCTG
GAGGCGTTCA CGGACCCCCT GAGCCGCGGC CAGACCCTAC CCAACCGCGC GGGCGCGCTG
CAGCTGGCCT GCCTGAACGA CGTGCTGGAT GACGTGGCCC TGCGCGGGGC GGCCCTGGCC
GAGACCGCGC GCCTGCTGGC GCCGGGGGCC ACGCTTTTCG TGGCCGGCGC CACCCCGCTC
GACACGCTGG AGGCCGAGAT CACCGCGGCA GGCTTCACGC CCGCGGGGCG CAAACGCCCC
TGCTCGGCGG TGCTGCGCTT CGACTGGATC GAGATCGGCC TCTATACCCG CGCCGGAGAC
ACGCAATGA
|
|---|
| Protein sequence | MNANADSMQR DRTDLEASGL FDPAWYLETY PDVAQLGMDP LEHFLWLGAR LNRSPGPTFD
AAAYRADYAD VARADYNPVL HYIRYGRPEG RKARAPGLTI PPLAESAGAS APFRRLTGHR
ARRPGHPTVL LVAHIVGHQL YGSERSLLDM LDGLAAMDAN VIVAVPSTRN KAYIELLRAR
ACAVSVLSYG WWRAGTAPDE TVIATFARVI TEERIDIVHA NTIMLREPLI AARRLGLPAV
VQARELIRHD AKLLELIGLS ADEIIAALWE NCDVMIANSR ATAACFDTET RRSAVVYNTA
DMTALQALPP PPAEAPLRVG MVSSNVPKKG LADFAEVARL VAAELPDAEF LLIGPQHEHT
EAIEARIADG SLPRSLRVAG YRDTPAEAMA ELDLVLSLSH FQESFGRTVL EAMAAGRPVI
VYDHGAPPEL VVSSKTGQVV PFGDIQAVAD QVLAYGRDRK RLLVDGLRAA DHAETTFGRT
AYNAAMAAAY APLLQELARD AHRPEQMVLR ARDLPVKIPR DTLKVAYFCW HFPVPSETFV
LNELRILKAQ GIDVTVFCRD SPYPDFTPDF DITWEQVHDA DHLARRLTET GRDVVHGHFV
YPTVTEMVWP AARIANIPFT CIAHAQDIFR YRNAVANRID EISADPLCRQ IFTLSRFHRQ
YLVDRGVRPE KVTINSNCID PELFSGGKIP DRPARRTRSV AAVSRFADKK GLEVLVRAGK
LLEDDGITIN IHGYGPLEDL YRQIIAEQEI TNVTIHGPVE GRAALLEVFR THDLFAVPSV
RALDGDMDGI PTTLMEAMAA GLPVLTTPVA GIPDLVRDGI TGMLSEDATP EALAAKIREF
YALPEIAVQV MIEDAEALLR RNHNGPDLVN TLLRFWAGET IDLMIVSWNN LAQTREVIRR
LYEYTDLPFH LIVCDNGSDP PALAHLLSVY AARTNFTLIL NRENAFVGPG TNKCIAQGDS
DYMIYVCGKE GMTTRHGWEK SFVTYMDAHP RVGQAGTLCY SPSYLFGRDY PEGVALFPDF
RNPGFAADNP DRPFSHVQGG FFVIRRATYD EIGGFSDAVP HSYTDVEFSY YVESCGWELG
TVPGLMALFN KTRPGLEARV DEHHGALHPP NLDDLPWLDR IARREVRHCN MCGHQAPAFE
GGDAEARCAG CGSDRRARSL HRVLAETILL YRRLPGLGVN LPAPLQGFWS DQFQGPMLPL
EAFTDPLSRG QTLPNRAGAL QLACLNDVLD DVALRGAALA ETARLLAPGA TLFVAGATPL
DTLEAEITAA GFTPAGRKRP CSAVLRFDWI EIGLYTRAGD TQ
|
|---|
| |