| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3804 |
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| Symbol | |
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| ID | 5714333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 11802 |
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| End bp | 12791 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641276719 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001542015 |
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| Protein GI | 159046344 |
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| COG category | [K] Transcription |
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| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.73714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.702757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGT CAGGCACCCC GTCTGAGCCC CGCCGCGACC CGGAGGACGC GGCGATCATG
GCCGTGATCG CCCGTGAGAC CGACACTTTC GTGGTGCGGG ATTTCGACGG TTGGGCCGCC
TGCTGGGTCC AGGATGCGCG CACGCGGCTA ATCAGCGCCT CCGCCGCGTT CGGGGTCACG
GTGCAGGACG GCTGGGAGGC GCTGGCCAGC TACATGCGCG GGGTCTTCGC GGCCGGGGCA
AGTTGCGAGA TCCTGAGCTT CGAGCGCCGC AATGTCAGCG TGACCCGGAC CGGCGGCTTC
GCCTTTGTCA GTTTCGAGGG GCACGGGGTG CACCGGGGCG GGCGGCACGA GCGCACCTTC
GAGACCCGGA CGCTGGAACA GGGGCCGCAG GGCTGGCTCA TCCTGCATGC CGCCTTCGTG
CTCAGCGGTG CGGTCGAAGA TGCCGGGCCG CGGATCGCCG TGGACGGGCG GGGACAGGTC
CTGTCGCTGC CCGAGGGGGC GCGCGCGGCC CTGGCGGGTC ATCCGGGCCT GACGATATCC
CAAGGGAGGC TCAGGGCGCG GCGCCCGGCC TGGGACGCGG TGCTGCAGGA GGGGTTGGCC
CGGGCCGCCG GGCTGCACGG GTTTTGCCAG CATTACCGGT TTACCGCCGA TCACGGGCGG
CAGTTCCGCC TGCCCCTGGT GCTGGGCGAG ACGGCGGAGG GCGGGCTTGC GGTCTGCATG
CTCTTCGTGC GGGACGGCAT GACCTTCGTC GATTTGCAGC CCGGGGGCGA TTTCGATGCC
CGGCTCGACC TGGCGCGCGC GCTCTACGGG TTGTCCGAGG CGCAGGCCGC CCTGGCCCGC
CACGTGGTGG GTGGGCAGAG CCTGACCGCG GCGGCGCGCG AGCTGGGCAT CAGCGTCAAC
ACCGCCCGGA CCCATCTGTC GCGCATTTTC GAAAAGACCG GGGTTCAGTC CCAGACCGCG
CTGGTGCGCA CCCTGCTCAG CATCGTCTGA
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| Protein sequence | MSVSGTPSEP RRDPEDAAIM AVIARETDTF VVRDFDGWAA CWVQDARTRL ISASAAFGVT
VQDGWEALAS YMRGVFAAGA SCEILSFERR NVSVTRTGGF AFVSFEGHGV HRGGRHERTF
ETRTLEQGPQ GWLILHAAFV LSGAVEDAGP RIAVDGRGQV LSLPEGARAA LAGHPGLTIS
QGRLRARRPA WDAVLQEGLA RAAGLHGFCQ HYRFTADHGR QFRLPLVLGE TAEGGLAVCM
LFVRDGMTFV DLQPGGDFDA RLDLARALYG LSEAQAALAR HVVGGQSLTA AARELGISVN
TARTHLSRIF EKTGVQSQTA LVRTLLSIV
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