| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3792 |
|---|
| Symbol | |
|---|
| ID | 5714460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009956 |
|---|
| Strand | + |
|---|
| Start bp | 167 |
|---|
| End bp | 1822 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641276707 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001542003 |
|---|
| Protein GI | 159046332 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.639455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.694676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACAC GATTTTGGGC AACGACTGCG GCCGCGACCA TGGCCGCCGT TCTGGCCTCC
GGCTCGGCCT GGGCTGAAAG CGTTCTGACG ATCGGGATGA CGGCGGCGGA TATTCCGCGC
ACCTCCGGTC AGCCGGACCA GGGTTTCGAG GGCAACCGCT TCACCGGGAT TCCGATGTAC
GACGCCCTGA CCCATTGGGA CCTGTCGTCC GAGACCGAGG CGTCGGTGGT GATCCCCGGG
CTGGCAACCG AATGGTCCGT GAACCCGGAT GACACGACCA AGTGGACCTT CAAGCTGCGC
GAGGGCGTGA CCTTCCATGA CGGCTCGCCC TTCAACGCCG AGGCGGTGGT CTGGAACGTG
GAGAAGGTGC TCGACGACGA GGCGCCGCAT TTCGCCCCCG ACCAGGTGGG TGCGACCGCG
TCGCGGATGC CGACCCTGCG CTCGGCCCGG GCGATCGACG AGCTTACGGT GGAGCTGACC
ACGTCACAGC CCGATGCGTT CCTGCCGCTG AACATGACGA TGCTCTTCAT GGCCTCGCCG
ACCCATTGGC AGAGCCTCTA TGACGCGGTG GATGCCGGGG TCACCGACCC GACCGAGCGG
GCGGCCGCGG CCTGGACCGC CTTCGCCGCC AACCCGTCGG GGACGGGGCC GTTCAAGGGC
GAGACCCTGG TGCCGCGGGA GCGGTTCGAG ATGGTGCGCA ACGAGAATTA CTGGGACCCG
GCGCGCACGC CGACCATCGA CCGGGTGGTT CTGGTGCCGC TGCCGGATGC CAACGCGCGC
ACGGCGGCCT TGCTGTCGGG GCAGGTGGAC TGGATCGAGG CGCCCGCGCC GGACGTGATC
CCGCGCATCG AATCCCAGGG CAACGTGATC TACGCCAACC CGCAGCCCCA TGTCTGGCCC
TGGCAGCTGT CCTTCGTGGA GGACTCGCCC TGGCTCGACA AGCGGGTGCG CCATGCGGCC
AACCTGTGTG TGAACCGCGA GGAGCTGCGG GTGCTTCTGG GGGGCTACAT GGGGGTGCCC
CAGGGCACGG TGAACGAGGG CCATCCGTGG TGGGGCAACC CGTCCTTCGA GATCAAGTAT
GACCCGGATG CGGCGCGCGC GCTGATGGAA GAGGCCGGGT TCGGCCCGGA CAACCCGCTG
AGCGTGACGG TGCAGACCTC GGCCTCGGGG TCGGGCCAGA TGCAGCCGGT GACCATGAAC
GAGTATGTCC AGCAGAACTT GGCGGAGTGT CATTTCGACG TGAACCTGGA CGTGATCGAG
TGGAACACGC TGTTCAACAA CTGGCGGGCC GGGGCGAAAT CCGAGGGCGC GCGGGACGCG
GATGCGATCA ACGTCTCCTT TGCGACGATG GACCCGTTCT TTGCCATGGT GCGGTTCGTC
TCGACCGAGA CCTTCCCGCC GGTGTCGAAC AACTGGGGCT TCTTCGGCAA TGACGAGTTC
GACGCGCTGA TCGCGGAGGC GCGGACCTCC TTCGACGATG CGGACCGGGA TGCGGCGCTC
GCACGGCTCC ATGCCCGGGT GGTCGAAGAG GCGCCCTTCG TCTGGATCGC CAACGACGTG
GGACCGCGCG CCATGAGCCC GCGGGTCGGC AACGTGGTTC AGCCCAAGAG CTGGTTCATC
GACATCGCGC CGATGACCCT CGACGACGAC ACCTGA
|
|---|
| Protein sequence | MRTRFWATTA AATMAAVLAS GSAWAESVLT IGMTAADIPR TSGQPDQGFE GNRFTGIPMY
DALTHWDLSS ETEASVVIPG LATEWSVNPD DTTKWTFKLR EGVTFHDGSP FNAEAVVWNV
EKVLDDEAPH FAPDQVGATA SRMPTLRSAR AIDELTVELT TSQPDAFLPL NMTMLFMASP
THWQSLYDAV DAGVTDPTER AAAAWTAFAA NPSGTGPFKG ETLVPRERFE MVRNENYWDP
ARTPTIDRVV LVPLPDANAR TAALLSGQVD WIEAPAPDVI PRIESQGNVI YANPQPHVWP
WQLSFVEDSP WLDKRVRHAA NLCVNREELR VLLGGYMGVP QGTVNEGHPW WGNPSFEIKY
DPDAARALME EAGFGPDNPL SVTVQTSASG SGQMQPVTMN EYVQQNLAEC HFDVNLDVIE
WNTLFNNWRA GAKSEGARDA DAINVSFATM DPFFAMVRFV STETFPPVSN NWGFFGNDEF
DALIAEARTS FDDADRDAAL ARLHARVVEE APFVWIANDV GPRAMSPRVG NVVQPKSWFI
DIAPMTLDDD T
|
|---|
| |