| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3653 |
|---|
| Symbol | |
|---|
| ID | 5714183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | - |
|---|
| Start bp | 51856 |
|---|
| End bp | 53406 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641276571 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_001541867 |
|---|
| Protein GI | 159046195 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000703924 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTGACC AAGCTTGGAA ACTGCTCCTC TTCTTGAAGG ACTTTACTGG GCGGGGCGAA
GACAGCTTCT ACTGGTTTGA CGACGGACAG CTGCTCGAAA CTGACGCCCA GGACGTCGTC
AGATTCTCCG GCGCCGTAGT CTGCCATGAT TTCTGGATGA TACGTGATGT GTTGTTCGAT
AAGACGAAAA CGCTGCCAAA TACGGTAATT GATCTCGACG AATTCCGGAT ATCCACCAGT
GGAAACCCTG AAGATCGTTT GGCACGCGAG AAGCACGACG TAACCGCTGT TCTTGAACAG
TATGGTGCCG AGCAGGAGGT GTGCTCCGCT TACAAGCGGA TGTTCAATAA AGGCCTACCG
TTCGAGCCAG GTGTCGCGTC CAAGGCGGCA GAGGCGCTTG CGAAAATGTA TCTTGCCCTG
CTTGAGCGCG CGAAGCTTAC AGGCGAAGCG GAACGCTTCC TTACTGTTGA AGTACCGGTC
TACCGGTTGC TTCAAAGCGC GATGGCCGTT GGCATCATGG TCGACAGGCA GCGATTGTCG
GAGATGCGCG CCGAGGCGGA ACATGACTAC TTCACGTGCC TCAAGAATTA CTCTGCGAAG
CACGACATGC CGTTGGAAAC TCCAAACAGA TCGGCGCTGG AGGAAAAGCT GCGTGCGGAT
GGGTTCGAAC TGGACGATGT TTCGATCGAG TATCTCCTCG AGTACGTGCC GCACCAACGG
GACTTCGGGA GCGACACCAT AGCCCTGCAG GCGGCGGACA CCGCACGGCG GGTGCTGGGT
TCGCTAGCCC TGTCGACCAC AATCATGCGG CCAGTATTGG ATGTATTTGG TTCCCGCACC
TCGCGCATCC ATTTGCGCAG CCCCAGTCTG CAGAACATGT CAAAGAAATA TCGCGGCATC
ATTGCCGGTC GCGAGGGTGC TGAGTTGAGC TACGTGGACT TCGATCAGTA CGAGGTCGGG
ATAATGGCCG CGCTCTCAAA GGATTGCGAG CTGATGAAGC TCTACGCTGC AGGTGATATG
TACGATCTTT TCGCCACCAC GCACCTTGGG CTTTCAGGGA ACAGAAAGGC TGCCAAGCAG
CTCTTTCTGT CCTACGCCTA TGGGATGAGC AAGAAGGCCT TGATCGACGC AGCAGTTTCG
CTAGGCGTAG ATCGGACTCG GGCCAAGAAT GCGTTCGGAC TATTCGCGCA GTACGAGACC
TGGAAGAGGT CGGTGTGGGC CGATTTCCAA GCCAACGGCC GTGTGGCGAC CTTGCTCGGC
AACCACTATC TACGCGAGCG CGACGGTCCG CTGACCGCTA AAGAACAGCG ATCTTCTGTG
AGCCAAGTCG TACAGGGGAC GGCGTCCCTC ATCTTCAAGA GGGCGCTGCT GGACGTTGGC
AAATTAGACG ACGTTACCAT CGTCCTTCCG ATGCACGACG CGCTACTCTT CGAACATACG
TCGGCAGATA CGCCCAACAA AGTTGTGACG GCATTCGAAA ACGCAATGAC GAACACACTG
GGAGGCGGGG TGAGGGGCAA GGCGTCTGTC GGCGCTTTCG CAATGGGCTG A
|
|---|
| Protein sequence | MIDQAWKLLL FLKDFTGRGE DSFYWFDDGQ LLETDAQDVV RFSGAVVCHD FWMIRDVLFD
KTKTLPNTVI DLDEFRISTS GNPEDRLARE KHDVTAVLEQ YGAEQEVCSA YKRMFNKGLP
FEPGVASKAA EALAKMYLAL LERAKLTGEA ERFLTVEVPV YRLLQSAMAV GIMVDRQRLS
EMRAEAEHDY FTCLKNYSAK HDMPLETPNR SALEEKLRAD GFELDDVSIE YLLEYVPHQR
DFGSDTIALQ AADTARRVLG SLALSTTIMR PVLDVFGSRT SRIHLRSPSL QNMSKKYRGI
IAGREGAELS YVDFDQYEVG IMAALSKDCE LMKLYAAGDM YDLFATTHLG LSGNRKAAKQ
LFLSYAYGMS KKALIDAAVS LGVDRTRAKN AFGLFAQYET WKRSVWADFQ ANGRVATLLG
NHYLRERDGP LTAKEQRSSV SQVVQGTASL IFKRALLDVG KLDDVTIVLP MHDALLFEHT
SADTPNKVVT AFENAMTNTL GGGVRGKASV GAFAMG
|
|---|
| |