| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1938 |
|---|
| Symbol | |
|---|
| ID | 5709789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 2012778 |
|---|
| End bp | 2013560 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641276446 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_001541745 |
|---|
| Protein GI | 159042493 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0723] Rieske Fe-S protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.144027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGGG ATAATGTTAA CCAAGGTAGG AGGAATTTCC TAAAAGTCCT AGTAACCCTA
GCCGGTGTGG CGATGCTGGC AAGCGCCCTA CCACCGGTGG TGGAGCAGAT AATACCACCT
GAAACCGGCC TCACATCATT CCCAAGACTA CTGCTGGTGG ATGAGAACGG TAACCCTGTT
AAGGCCTCCC AAATACCCGT GAATACTCAA GTCATCCTAT CATTTCCCTA CCCCCTTAGT
AATGAGCCTA ATATGCTGCT TAATCTCGGC GACTCCTCTG GTAGGCCTGT GGAGGTTCCT
CCCACTACTG TTGTTGTTCC TCAGACTGGT GCATCATATG AATTCCCAGG TGGAGTAGGT
CCATATAAGT CAATTGTTGC ATATAGTGGA ATATGTCAGC ACTTGGGTTG CCAAATGCCA
TTAATGAGCT TCTACCCAAA TGCATCAAAC TGTCAACCAG CAGCAACATC AGCCGGTAAC
CTTAAGGGTG TCATCCACTG CCTATGCCAC GGATCCACAT ACGACCCATA TAAGGGTGGT
GCTGTGGTTA CTGGGCCAAC AGTAAGGCCT TTACCGGCTG TGGTTCTTGA ATGGGATTCA
AGCACTGATG AATTATACGC AGTGAAAATG ATAGGACCAG TAATATACGG GCACCCAGGC
TTCAACACAC CCACAAACAA CACAATAAAC AACCCAATAG GGGACCTACA GGGTGGTAGT
GCGGCTGGTT CAGTATCAAC CATTGTTTCT AATCTAGGTA AGTTAACCCA GTGTTCAGGG
TGA
|
|---|
| Protein sequence | MMGDNVNQGR RNFLKVLVTL AGVAMLASAL PPVVEQIIPP ETGLTSFPRL LLVDENGNPV
KASQIPVNTQ VILSFPYPLS NEPNMLLNLG DSSGRPVEVP PTTVVVPQTG ASYEFPGGVG
PYKSIVAYSG ICQHLGCQMP LMSFYPNASN CQPAATSAGN LKGVIHCLCH GSTYDPYKGG
AVVTGPTVRP LPAVVLEWDS STDELYAVKM IGPVIYGHPG FNTPTNNTIN NPIGDLQGGS
AAGSVSTIVS NLGKLTQCSG
|
|---|
| |