| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1930 |
|---|
| Symbol | rpl22p |
|---|
| ID | 5709557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 2004675 |
|---|
| End bp | 2005232 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641276438 |
|---|
| Product | 50S ribosomal protein L22P |
|---|
| Protein accession | YP_001541737 |
|---|
| Protein GI | 159042485 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0091] Ribosomal protein L22 |
|---|
| TIGRFAM ID | [TIGR01038] ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.70908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTATT GGTCTATAAG GGATGAGGAT GTGATTGATT TAGTTAAGAG GAGGTATAAC
GTAACCATTA GCGCTGACCA GATAGCTAAG GCTAGGGGCT TTGAGTTTAG GATTAGTTGG
AAGAAGGCTA TTGAAACCGC CAGGGCCATT AGGTTCCTTA CAATTAAGCA GGCTGAGGAC
TACATGGAGA AGGTTAAGGA CTTAAAGGCC CCGATACCCA TTAAGGAGTT CACTAGGAAG
CAGGCTCACC ATAATGTTCC CTGGGATGGT TGGCCAGTGG CTAAGTGGCC TGTTAAGGTA
GCTGACTCCT TCCTCCAGGT TTTAAGAAAC CTTGAGAGTA ATGCAAGCTA CAGGGGTTTA
AACATTGATA ACACAGTTAT AGTTCATGCA TCCGCAAGCA GGGGTATGAG GATTAGGAAT
TACATGCCCA GGGCCCTTGG TAGGGCTACC CCATGGTTCC AGGACACGGT TAACATTGAG
CTTGTGGCTG TTGAATTACC CGCTGAATTA GTTCCCAAGA AGTTCAGTTG GGCTAGGGTT
CTTAAAGCCA TTAAATGA
|
|---|
| Protein sequence | MRYWSIRDED VIDLVKRRYN VTISADQIAK ARGFEFRISW KKAIETARAI RFLTIKQAED
YMEKVKDLKA PIPIKEFTRK QAHHNVPWDG WPVAKWPVKV ADSFLQVLRN LESNASYRGL
NIDNTVIVHA SASRGMRIRN YMPRALGRAT PWFQDTVNIE LVAVELPAEL VPKKFSWARV
LKAIK
|
|---|
| |