| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1879 |
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| Symbol | |
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| ID | 5709154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1953998 |
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| End bp | 1956910 |
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| Gene Length | 2913 bp |
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| Protein Length | 970 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641276387 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001541686 |
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| Protein GI | 159042434 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.149039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0231063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAGTAG TAATAATGTC TATTGATGTA TTAAGCATGC TGCATCCCAT GGTTAAGGAA
TTAGTGGTTA AGAGGGGCTT CAGGGAATTA ACCGAGCCTC AGCTTAAGGC AATCCCAGTC
ATATTAAGCG GTAAAAACAC CCTACTAATA GCCCCCACTG GTAGCGGTAA GACTGAGGCT
GCCCTACTAC CTGTCTTATC AATGTACCTA AATATGCCTC AGGATAAACC GAGGGGAATC
TACATACTAT ACATAACCCC CCTCAGGGCC CTTAATAGGG ATTTACTAAG GAGGATTGAG
TGGTGGGCTA GTGGGGTTGG GTTAACTGTG GCTGTTAGGC ATGGGGACAC TGATAAGAAT
GAGAGGGCTA GGCAGAGTAG GAACCCTCCT CAATTACTCA TAACCACCCC GGAGACCCTT
CAAATACTCT TCATTGGTAG TAGGCTTAGG GAGCACATAT CTAAGGTTAA ATGGGTTATA
GTGGATGAGG TTCATGAGTT AGTTGAGGAT AAGAGGGGGA GTCAATTATC AATCGGCCTA
CAGAAGCTTA AGGCCTTGGC GGGTAGATTC CAGGTAATTG GATTATCGGC ATCAGTGGGT
TCACCCAGTG AAGTGGCTAA ATTCCTTGTG GGTAATGATG AGGAGTGTGA AGTCATTAAC
CTATCCTTCA CTAGGAATTA CCAATTCGAT GTAATTAACC CAGCAGTATC ATTAAGTAAC
GCGGACATTA ATGAACTTAA GGCTAGGTAC ATGATTGTGA ATAACATTAA TGCTGATGAA
TTATTCCATA ACGATGCCTT AGCCAGGTTG CTGTACGTCA TGAATCTAAT TGATGATGGT
GGTAAGTCAT CAATAGTTTT CGTTAACACC AGGTCAATGG CTGAGTTACT CACCTCAAGA
ATACTCATGA TTAACCCAAC CTACCCAGTA TCAATACACC ACAGTTCATT ATCCAGGGTT
AATAGGCTTA ACACAGAGGA GATGCTTAGG GGTGGTAGGC TTAAGGCTGT TGTAGCCACA
TCAAGCCTAG AGCTAGGTAT TGATATTGGG CACGTTGACC AGGTTATTCA ATACGTTTCA
CCGCATCAAG TCACCAGGCT TGTTCAGAGG GTTGGGAGGA GTGGGCATAG GCTTGATAAG
GTACCTAAGG GCATTATAAT AACTGAGGAT ATTAACGATA CCTTGGAGGC AATAGCCATA
GTGAATAGGG CTAGGGCCGG CTGGCTTGAA CCAACCAAGT CCCCTGAGAA GCCTTACGAC
GTCCTCTTTA ATCAAATAGT ATCCCTGATA CTCATGAAAC CCAGGTGGAC TGTTGATGAG
ATACTCAACA TAGTTAAGGG CGCCTACCCC TACAGGAACT TAACTAGGGA TGAGTTGATT
GCAGTTCTCA GATTCATGAG TGAGGGCCTT AGGCCTAGGT TAGTCTACTT CATTGAGGAG
GAGGGTGTTG TGTTAAAGCC GAGGAGCCCT AGGTCCAGGA TTGAGCTTAG GGAATACTTC
TTCAACAACT TATCAATGAT ACCTGAGGAG AAGCAGTACC TGGTTACTAG AGTTGATACA
GGTGAGGTGG TTGGTGTGCT TGATGAGGCA TTCATGGCTG AGTATGGGGA ACCAGGAATA
AAATTCGTAT TCAGGGGTAA CGTATGGATA CTTAGGTCAA TTAAGGATGA TGTAATTTAC
GTTGAACCAG CAAAGGACCC AGTGGGTGCT ATACCATCAT GGATTGGGGA AGAGATACCC
GTCCCCTTTG AGATTGCGCA AGACGTCGGT AGATTGAAGA GAATAATAAC AGACGAGTTA
AGGAACGGCG CCAGTGAGGA TGCGTTAATT AGTAGGTTGA CCAAGGAGTT GGGTGTATCT
AGGCGCACGG TTAAGTACAT TGTGTCAACT ATTAAGGAGC AGTTGAAGTA CGGCTTCGTG
CCAACTGATG ACTCAATAAT CATTGAGAAG GTTGGTGAAT TAGTCGTCGT ACACGCCAGC
TTCGGTACAT TAGTGAATAG GACATTATCA AGATTATTAG CCAGCTACAT GACGCATGCC
CTTGACTTAC CGGTTAGGGT TCAACAGGAC CCATACGCAA TAATACTTCA ACTACCTAGT
AAGGTTGGGC CAGGCATCAT AATTGAGTCC CTGAGGGCGT TGGCGAACTT AAGCATGAGT
GAGTTCATCC AGTATATTAA GAGGATTGCC CTTGAGACTG GTTTATTTAA GAGGAAGGTG
GTTCACGTAG CTAGGAGGTT CAACGTAATT AAGAGTGATA AGTCTGTCTC AGACATTAGC
TTAACCAACC TGATACAAGC CCTTGAGGGT ACACCGGTTT ACGTTGAGGC GCTTAGGGAG
TTCATAACAA GTGATCTTGA TGTTGATGGA GCCGTAAGGG TGCTTAAGTC CATACTGGAT
GGAACCATTA AGGTGAGTGT AATTGAGGGG AGTGAATTCA GTCCAATGGC TAGGGAAATC
CTAAGTAAGG CTAGCAGTAG GCTTGAGGTA ATTGCCCCGG AGAGGTTGGA TAAGTTAATA
ATTGAGAGTG TGAAGGCTAG GTTGCTTAAT GAACCATTAA CCCTGGCATG CCTTGAATGC
GGTAACGTCT ACATTGGGAG TGTTAAGGAT TTGATTAAGG ACTTGAAGTG CCCTAAGTGT
GGTTCAGTTA AGTTAACTGC ATCAAAGATG GAGCCTGATA AGGTTGCTGC AATAATTAGG
AGGGGTAGTG GTGATGATTA TGATAGATTA GTGAAGGCCA GTGAATTATT GACTAAGTAT
GGTTGGAGGG GGTTAATGGC TATAGCGAGT AGGATTAGTC TACGCAGGGC TGAGGAATTC
CTATCATCAG ATGGGTCGGA GGACTTCAAT GAATTCATAA TTAAATTATA CAACGCCGAG
AAGGAGGAGG TTAAGCAGAG GTTCTTCACT TAA
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| Protein sequence | MSVVIMSIDV LSMLHPMVKE LVVKRGFREL TEPQLKAIPV ILSGKNTLLI APTGSGKTEA
ALLPVLSMYL NMPQDKPRGI YILYITPLRA LNRDLLRRIE WWASGVGLTV AVRHGDTDKN
ERARQSRNPP QLLITTPETL QILFIGSRLR EHISKVKWVI VDEVHELVED KRGSQLSIGL
QKLKALAGRF QVIGLSASVG SPSEVAKFLV GNDEECEVIN LSFTRNYQFD VINPAVSLSN
ADINELKARY MIVNNINADE LFHNDALARL LYVMNLIDDG GKSSIVFVNT RSMAELLTSR
ILMINPTYPV SIHHSSLSRV NRLNTEEMLR GGRLKAVVAT SSLELGIDIG HVDQVIQYVS
PHQVTRLVQR VGRSGHRLDK VPKGIIITED INDTLEAIAI VNRARAGWLE PTKSPEKPYD
VLFNQIVSLI LMKPRWTVDE ILNIVKGAYP YRNLTRDELI AVLRFMSEGL RPRLVYFIEE
EGVVLKPRSP RSRIELREYF FNNLSMIPEE KQYLVTRVDT GEVVGVLDEA FMAEYGEPGI
KFVFRGNVWI LRSIKDDVIY VEPAKDPVGA IPSWIGEEIP VPFEIAQDVG RLKRIITDEL
RNGASEDALI SRLTKELGVS RRTVKYIVST IKEQLKYGFV PTDDSIIIEK VGELVVVHAS
FGTLVNRTLS RLLASYMTHA LDLPVRVQQD PYAIILQLPS KVGPGIIIES LRALANLSMS
EFIQYIKRIA LETGLFKRKV VHVARRFNVI KSDKSVSDIS LTNLIQALEG TPVYVEALRE
FITSDLDVDG AVRVLKSILD GTIKVSVIEG SEFSPMAREI LSKASSRLEV IAPERLDKLI
IESVKARLLN EPLTLACLEC GNVYIGSVKD LIKDLKCPKC GSVKLTASKM EPDKVAAIIR
RGSGDDYDRL VKASELLTKY GWRGLMAIAS RISLRRAEEF LSSDGSEDFN EFIIKLYNAE
KEEVKQRFFT
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