| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1747 |
|---|
| Symbol | |
|---|
| ID | 5708655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1825495 |
|---|
| End bp | 1826049 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641276258 |
|---|
| Product | tRNA intron endonuclease, catalytic-like protein |
|---|
| Protein accession | YP_001541560 |
|---|
| Protein GI | 159042308 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1676] tRNA splicing endonuclease |
|---|
| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.817286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGTG CTAAGATTCT TAGGGTTAAG AGTGTGGGGG ATTTCTACAT CATTGAAGAT
GAATTATCTA GGTTACTTCT CAATGATAAG AGGCCTCTTG ACCCGGATAA AATAGATCCA
ATAGAATTAG CTTACTTAAT ATATATTGGC GACTTTAAGG TTTACGTTGA TGGGAGGCAA
GTCTCAATAA GTGATGTACT TCATTCAGGT GATTTAGAGA GATTCATGGT TTACCTGGAT
TTGAGGAATA GGGGATTGTA CGTTAAGCCG GTTAGGGATG GTAAAATAGA TATGCTTGTT
TGGGATAAGA AGAAGAATGC CCTCTCATCA AATCCCCAAT ACATGATTAA GATACTTGAT
GAGGGTAGGG GAATTAAAAC AACGGAATTA CTTGAATTAA CTGATTACGC TGAAAGGAAT
AGGATGAAGC TCATATTAGC TCTATTAAGT TCAGAGGGGA CGTTAACCTA CTATAGGGCG
TTTACAATAG AGCCTACTCA AAGGGATGCG GAATGGTTGA GGGTGAGGCA GGTTGGTGAG
CTTAAGGGAC CTTGA
|
|---|
| Protein sequence | MRSAKILRVK SVGDFYIIED ELSRLLLNDK RPLDPDKIDP IELAYLIYIG DFKVYVDGRQ
VSISDVLHSG DLERFMVYLD LRNRGLYVKP VRDGKIDMLV WDKKKNALSS NPQYMIKILD
EGRGIKTTEL LELTDYAERN RMKLILALLS SEGTLTYYRA FTIEPTQRDA EWLRVRQVGE
LKGP
|
|---|
| |