| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1729 |
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| Symbol | |
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| ID | 5709785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1805417 |
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| End bp | 1806046 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641276240 |
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| Product | ribonuclease HII |
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| Protein accession | YP_001541542 |
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| Protein GI | 159042290 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0164] Ribonuclease HII |
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| TIGRFAM ID | [TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.110653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGGACGG TAAACAGTCT TGAGGCAGGG ATAGATGAAG CCGGGCGAGG CCCAGTAATA
GGACCAATGG TAATAGCAAT AGTGGGCTGG AGTAATTCAG AGGCTGAGGG CATAGGGGTT
AAGGACTCTA AACAATTAAC CCCAAGTGGA AGGAGTAGAT TATATAAGCT AATAGTGAGT
AAGGCGCCAT GCGTTAGGCA TGTTATTGTT GAGCCCAGTG AAATAGATTA TTACGTTAAT
AGGGGGTTAC TGAACGAGCT TGAGGCTATT AAGATGAGTG AGCTTATTAA AGCATGTAGC
GGGGTTACTA GGGTTTACGT GGATTCACCT GATCCTAACC CAAGCAGGTT TAGGGGATTC
ATTAATGTTA AGGACGTGGA GTTAATAGTG CTTAATCACG CCGATGAGTC AATACCATTA
GTGTCAGCAG CCAGTATAGT GGCTAAGGTA ATTAGGGACA CTATAATAAG TAGGCTTAAG
GAAACCTACG GGGACTTCGG GAGCGGTTAC CCAAGTGACC CAAGGACCAT AAGTGCCTTA
AGGAGGTGGA TTAATAATGG CACCTTACCA CCAATAGTTA GGAGGAGTTG GAGGACTATT
AAGAGAATGA CTAATAGTAG GTTATTTTAG
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| Protein sequence | MGTVNSLEAG IDEAGRGPVI GPMVIAIVGW SNSEAEGIGV KDSKQLTPSG RSRLYKLIVS
KAPCVRHVIV EPSEIDYYVN RGLLNELEAI KMSELIKACS GVTRVYVDSP DPNPSRFRGF
INVKDVELIV LNHADESIPL VSAASIVAKV IRDTIISRLK ETYGDFGSGY PSDPRTISAL
RRWINNGTLP PIVRRSWRTI KRMTNSRLF
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