| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1576 |
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| Symbol | |
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| ID | 5709230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 1649632 |
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| End bp | 1650963 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641276084 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_001541389 |
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| Protein GI | 159042137 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0247581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGC CAACTGAGGC TCCCTTGGAT CTGCAAGTAG GTATGGAGTA CTACATAACC
GACTGCGGTG GAGTTGGGGG TAGGTTAAGG AGTAGTTATG AGGATTTCAT TGTTGAGGAA
GTTTTAATCG ATGGGATGGT TATATCATTA AAGGCTCCAG TGAATATTAA GCCTAAGCCC
GGTCCATACA CTTGGATTAT TATTGAGAAG AGGGGGATTG ATACAATTAG CCTAGTGGTT
ACGCTTAGTA GGAGGCTTGG CGTTAAGCTT AGTGACGTAT CGTATGGTGG ATTAAAGGAT
ACTAAGGCAG TGGCTACTCA AGTAATATCA ATTAAGGGTA TTACACCAAT GCAATTAGAG
GGCTTAGACC TAGGTCCTAG GGTTAGGGTG GTGGCTTCAT TCTCAATGGA TAAGCCCTTC
ACACCCAGTG AAATATGGGG GAATCAATTC ACCATAGTGA TCAGGGGCAT TACTGGTGAT
GAATCAGTAT TTAATTGTGT CATTGAGCAG GTCATGGAGA GGGGGTTACC ATCATACTAT
GGTTACCAGA GGTTTGGTTT AAGGAGACCT AACTCACATA TAATAGGTAA ATTAATCATA
ATGGGTGACT TCGAGAAGGC TGTCGAGGAA TTGGTTGCTA AACCATACCC CTATGAGGAT
GATACCATTA GGAAGGCTAG GGAATTAGCG GGAATGGGTG AGTACTCTAA GGCCCTTGAG
TTACTACCAA GGAGCATTAG GTATCTTCCT GAGAGGCTTG TGCTTAAGCA ATTATTAATG
GACCCGGGAA ACTACATGAA TGCTTTAAGT AAATTACCGG TGAATTTACT TAAACTATAC
GTTGAGGCTT ATCAATCCTA CCTCTTCAAT AAGGCTTTAA GCGCCAGGAT AGGGAGGGGT
ATTAGTATAA ATAGGGCCGT TGATGGTGAC TTAATAGTCC TCCTTGATGA ACACGGGTTA
CCCACTGGTA ATGTTATTAA GGCTGAGGGT TCAATGGTTG ATAAGGTTAA TTCAATAATA
AGTAAGGGTA GGGCAACGGT GGTTGGGCAC CTTGTGGGTT ACAGGAGTAG GTTTAATAAT
GGTGTTCAGG GTGAGATTGA ATTAAGCGTA CTTAAGGCTG AGGGCATTGA GCCAAGTGAC
TTTAAGGTAA GTGGCATGCC TAAATTAGCC ACTGGGGGTG GTGTTAGGTG GCTCAGCATT
AAGCCGATTA TACACTCAAT ATCAGTAAAT GGAAGCAACG CTAAATTAAT CTTTAAACTA
CCTAAGGGTA ATTACGCAAC AACCCTGCTT AGGGAATTCA TTAAACCTAA TAGGCCTGAA
TTAGATTTCT AG
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| Protein sequence | MPKPTEAPLD LQVGMEYYIT DCGGVGGRLR SSYEDFIVEE VLIDGMVISL KAPVNIKPKP
GPYTWIIIEK RGIDTISLVV TLSRRLGVKL SDVSYGGLKD TKAVATQVIS IKGITPMQLE
GLDLGPRVRV VASFSMDKPF TPSEIWGNQF TIVIRGITGD ESVFNCVIEQ VMERGLPSYY
GYQRFGLRRP NSHIIGKLII MGDFEKAVEE LVAKPYPYED DTIRKARELA GMGEYSKALE
LLPRSIRYLP ERLVLKQLLM DPGNYMNALS KLPVNLLKLY VEAYQSYLFN KALSARIGRG
ISINRAVDGD LIVLLDEHGL PTGNVIKAEG SMVDKVNSII SKGRATVVGH LVGYRSRFNN
GVQGEIELSV LKAEGIEPSD FKVSGMPKLA TGGGVRWLSI KPIIHSISVN GSNAKLIFKL
PKGNYATTLL REFIKPNRPE LDF
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