Gene Cmaq_1454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_1454 
Symbol 
ID5709215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand+ 
Start bp1531659 
End bp1532264 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content40% 
IMG OID641275964 
Productpolysaccharide deacetylase 
Protein accessionYP_001541269 
Protein GI159042017 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0891104 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0000678514 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATGTGG CTATTACGTT TGATGACGGT TACAAGGAGC AATTAAGTAT TGCTAAGTGG 
CTAGCTAGTA GAGGGATTAA GGCTACATTC TTCGTAATAG TTGGCTTAAG GGAGTATATG 
GGGAGAGCGT TACTAACTCC TAGCGATCTA AGGTATATTC GTAGTCTTGG TCATGAAATC 
GGTAGTCATA CGATGACCCA TATAGACATG GTAAATACTG ATGCTGAGTT AATACGTAGG 
GAGCTCGTTG AGAGCAAGCG TATGCTTGAG GACATGCTTA ATGAATCTAT CACCTCTTTT 
GCGTATCCAT TTGGCCCTCA CACGGCTGTT GCAGCGCAGA TTGCCAGGGA GATTTACAAA 
GTGGTTAGGG GCACCTATAT AGGTCCTGCC ACGGGTTACA GGATTTTTGA TGAACATTGC 
TGCGTGCTCG CTTATAATCT AAGGCTCAGT AATATTTATG AAATATTCAG GTTAAAAAAG 
CTTGATACAT CAATCCTTTA TTTTCATTTA CCCAATTTAG CTAAGTTAGA CATCATATTA 
CAGGCATTAA GGGTTTTAAG ACCCAGGTAT CTAACACTCA CCGAACTATA CGATAAAATT 
AAATAA
 
Protein sequence
MNVAITFDDG YKEQLSIAKW LASRGIKATF FVIVGLREYM GRALLTPSDL RYIRSLGHEI 
GSHTMTHIDM VNTDAELIRR ELVESKRMLE DMLNESITSF AYPFGPHTAV AAQIAREIYK 
VVRGTYIGPA TGYRIFDEHC CVLAYNLRLS NIYEIFRLKK LDTSILYFHL PNLAKLDIIL 
QALRVLRPRY LTLTELYDKI K