Gene Cmaq_1272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_1272 
Symbol 
ID5708817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp1340597 
End bp1341079 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content44% 
IMG OID641275778 
ProductDoxX family protein 
Protein accessionYP_001541089 
Protein GI159041837 
COG category[S] Function unknown 
COG ID[COG2259] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.938699 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000000103302 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTATCC TAGGTCTAAT ACTAGGTACG TACAGCGGAT ACTTAACAGT CAGTGTAGCA 
GCCTTAGTGC TAAGAGTCTT CGTGGGTGTT AACTTCATGG TGCATGGCCT ACCCAAGTTA
ACAGGTGAGT CGAGGAGGTC TATGAGGGAT GGATTGACTA AGCTACTTAA CATACCTGGT
GCCCTATTTG ACCTAACTGC ACTCCTCGAA TTCATAGGTG GCTTAGTCCT AGTATTAGGG
CTACTCACTA GGATAGCTGC AATACTGTTA GCTCTGGAGA TGGTAATAAC AACAATACTT
TATATAACCA AGCTATATAA TGCACCATTA CCAAGGGGTT GGACTGAACC AATGTTTAAG
GCAACTAAAG GCTACATGTT TGGCTGGGAG TTGGACACCT TACTCCTTGC CTCATCAATA
GCATTAGCCG TAATAGGTCC TGGTGCATTA TCAATAGATC ACCTAATACT GGCCTACGCG
TAG
 
Protein sequence
MSILGLILGT YSGYLTVSVA ALVLRVFVGV NFMVHGLPKL TGESRRSMRD GLTKLLNIPG 
ALFDLTALLE FIGGLVLVLG LLTRIAAILL ALEMVITTIL YITKLYNAPL PRGWTEPMFK
ATKGYMFGWE LDTLLLASSI ALAVIGPGAL SIDHLILAYA