| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1210 |
|---|
| Symbol | |
|---|
| ID | 5709128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1275565 |
|---|
| End bp | 1276482 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641275714 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001541027 |
|---|
| Protein GI | 159041775 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.928511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0300377 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTAAGG CTGAGGGATT AGGTAAGACA TATGATGGTG TTAAGTGGGC CTTAAGGAAC
ATTGACTTAA GCGTTAATCG AGGGAAGGTA GTCACCTTAC TAGGCCCTAA TGGTGCCGGT
AAGACGACTC TAGTTAGGAT ACTTACCACT GAGCTTGAAC CCACTACAGG TAAGTTAACC
ATACTTGGGG AGGATGCCTT AAGGAACCCT GAGAGGGTTA GGCCTAGGAT AGCCTCAATA
CCCCAGGAGG CTAAGCCAAT ATACTTCGTG ACACCGTATG AATTAGTCTT CTCCTACCTA
GTCTTCAGGG GTTTCTCAAT AAATGATGCT AAGGTTGAGG CCAGGAGGGC CCTTGAGGAA
CTTGACCTAT GGAATGTTAG GAACAAGATA ATGAATAACC TATCCGGCGG CTATAAGCGA
AGGGCCTTAG TAGCCATGGC TCTCGCCAGT AATGCTGAGT TGGTTTTCAT GGATGAACCA
ACCACCGGCC TTGACGTGTT CAGTAGGAGG AGTGTTTGGG ATGCATTGGC TAGGCTTAAG
GGTAATTCAA CAGTAATATT GACTACGCAT TACATCGAGG AGGCTGAGTT CCTGAGTGAT
GAAGTCTTCA TAATGAACAA TGGGGTAGTG GTGAGTAGGG GTACTGTTAG TGAATTATTA
AATAAAGTTA ACGGTGAGTA CGTTGTTGAG GTTTACGGTA TCAGTAAGCC AATATTCGAG
GGTTACAGTT ACGTTAAGTT AAATAACAGG TACTTGGTAT ACGTCGACAC GAGTGAGGAT
TCATCATTAA TAGCCAGTGA GTGCGCTAGA ATGGGTGGGA AGGCATTAAT GAGGAGGAAG
ACCCTTGAGG ACGTTGTAAT TAGGTTAATT GGAGGGTGGT ATGAAGATGA ATCTTCAGGA
GATTTGGATT CAGATTAG
|
|---|
| Protein sequence | MIKAEGLGKT YDGVKWALRN IDLSVNRGKV VTLLGPNGAG KTTLVRILTT ELEPTTGKLT
ILGEDALRNP ERVRPRIASI PQEAKPIYFV TPYELVFSYL VFRGFSINDA KVEARRALEE
LDLWNVRNKI MNNLSGGYKR RALVAMALAS NAELVFMDEP TTGLDVFSRR SVWDALARLK
GNSTVILTTH YIEEAEFLSD EVFIMNNGVV VSRGTVSELL NKVNGEYVVE VYGISKPIFE
GYSYVKLNNR YLVYVDTSED SSLIASECAR MGGKALMRRK TLEDVVIRLI GGWYEDESSG
DLDSD
|
|---|
| |