Gene Cmaq_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_1172 
Symbol 
ID5709435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand+ 
Start bp1230755 
End bp1231762 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content48% 
IMG OID641275673 
Productisopropylmalate/isohomocitrate dehydrogenase 
Protein accessionYP_001540989 
Protein GI159041737 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase
[TIGR02019] bacteriochlorophyll 4-vinyl reductase
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.651985 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGATAG CCGTAATAAG GGGGGATGGA ATAGGCCCTG AGGTTGTTGA CTCAGCCTTA 
AGGGTCCTTA AGGCCGCTGC GGCTAAGTAT GGGTTAACCA TTGAGCTTCA TGATGTTGAA 
GCCGGTGACT CAGCCTTAAG CAAGTATGGT GAAGCATTAC CAAGTAAATA CTGGGGTATT 
ATTGAGTCCT CAGACGCCAT ACTAAAGGGG CCTGTGGGGG AGAGTGCTGG TGATGTTGTG 
GTTAAGTTAA GGAGGGGCCT TGACCTATAC GCCAACATTA GGCCAGCTAA GGTGTATCCG 
GGTGTTAAGG CGCTTAGGGA TGGGGTTGAC TTAATCATAG TTAGGGAGAA CACTGAGGAT 
GTTTACGTTA GGGCTGAACA CATGTTGACG AATGACGTGG CAGTGGCCTT AAGGGTTATT 
TCAAGGAGAG CCAGTGAGAG GATTGCTAAG GTTGCCTTTG AATTAGCTAA GGCGAGGAGG 
AATAAGGTAA CCATAGTCCA TAAGGCCAAC GTATTAAGTG TAACAGATGG CTTATTCAGA 
ACAGTGGCTA GGGAGGTTGC CTTAAAGTAC CCTGGAGTTA CAGTTAATGA AATGTACATT 
GACTCCGCTG TAATGGATAT GGTTAGGAGA CCCCAGGACT TCGACATAGT GTTAACCACC 
AACCTCTACG GTGACATACT AAGCGATATA GCCGCCTACG TAACCGGCAG CATAGGCTTA 
GCCCCATCAG CAAACATGGG TGATTCAAAG GCAATGTTTG AACCAGTTCA CGGCGCCGCA 
TTCGACATAG CCGGTAAGGG TATTGCTAAT CCAACAGCCA CAATACTCTG CATATCCTGG 
ATGCTTAAAT GGTGGGGTGG TAAAACGGGC AATGGGAGTT ACGTAACCGC CGGTGAGGCG 
ATTGAACGTA GTGTCCTAAA TACCTTAAGT AGCGGTAAGT TAACCCCAGA CCTAGGCGGT 
GGCTTAACCA CTAATGCATT CACCGAGGAG GTTATGGCAC ACTTATGA
 
Protein sequence
MRIAVIRGDG IGPEVVDSAL RVLKAAAAKY GLTIELHDVE AGDSALSKYG EALPSKYWGI 
IESSDAILKG PVGESAGDVV VKLRRGLDLY ANIRPAKVYP GVKALRDGVD LIIVRENTED 
VYVRAEHMLT NDVAVALRVI SRRASERIAK VAFELAKARR NKVTIVHKAN VLSVTDGLFR 
TVAREVALKY PGVTVNEMYI DSAVMDMVRR PQDFDIVLTT NLYGDILSDI AAYVTGSIGL 
APSANMGDSK AMFEPVHGAA FDIAGKGIAN PTATILCISW MLKWWGGKTG NGSYVTAGEA 
IERSVLNTLS SGKLTPDLGG GLTTNAFTEE VMAHL