| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0875 |
|---|
| Symbol | |
|---|
| ID | 5708730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 918858 |
|---|
| End bp | 921182 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641275378 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001540700 |
|---|
| Protein GI | 159041448 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TAAATATACA TTGCAATAAA TGTTATGCTA TGGGTAAAAA CACACCCCTA
ACCCTAGTAG TAGCAGCAGT AATAGCCATA AGCATCGCCG TAGTAAACAT AGCCTACGCA
GCTTCAAATA CGGTAACAAT AGTTACTACA GAGGGTACGC TCATTTACAC TCCTGGTCAA
CCTATCTGGA ATCCATACGC ACCCAACAAC TTCATAGGCG TTGTGGGGAC ATACATGTCT
CTCGCATTCT ACAATCCACT TACAGCTAAA TTCTATCCTG TTTTGGCTGA GAATTGGACT
GTTGAGGTTT TGCCTAATGG TAGTGGTATT TTAACTATCT ATCTTAGGCA TAACTTGTAT
TGGTTTAATG GTTCAGCGGT AATGCCCTTC ACTGCTTGGG ATGTTTACGC TGAATTCTAC
ATTGGTGTTA AGGTGTTCAG CTGGTACTAC CCATTCATGC AACCGCAATA CGCCGATGAA
GACATTAGAG TATTGAATAA TTACACAATA CAATTCCTAT TCCAAGAGTG GAGCCCACAG
CAAATATACT ACGTGTTAAC TACCTGGATT GATACACCAT ACGCCGTATG GAAACCAATA
GTGGATAAAC TCAAAACAAT GAGCGTCAGT CAAGCAGCAG CATACGGTAA TAATGTCACT
AAGTTTGCTC CGCCATACTG GGGTTTAAGC CCATATTATG TTCAATTATC AACATTGAGC
GCAACCTACC AGACACTGTT ACTTGAACCA ATGTACTTCA ATGGTGTCCC ATTACTGGCA
TCATGGGATA AAATATTCCC ATTCAATGAT TGGAGCATCT ACCCGAAGTA CGTTATATGG
GCGGTTGGTG GTAATACTCA AGCAATGACT GCCCTTCTGG CTCGTAAGGT TAATTTAGCG
TTCATTGGCT TGTCACTGCA GCAGGAGGCT ACGATAAATG CTAGTGGCCT CGGTGAATAT
AATGGGCCGA ATTATGCGAC TAATGGCTAC ACGCTTAATC CAAACATTTA CCCATTCAAT
ATTCCTCAGG TTAGGCAGGC ATTCTGCTAC ATTATTAATA GAACGGCTGA ATCATTGGCC
TGGGGTGGAT TATATGCACC TGACCCATAC CCAGTCCCTG TAGCCAACTT CCAGCCATCA
ATACAATCAT ACCCATCAAG CGTGTGGAGT ATTGTAACTG TGCATTGTAC AACAAATTGG
ACTAAGGCAG CTCAATTACT GGAATCAGCC GGTTTAACCT ATAAGAATGG TCAATGGTAT
CTGCCTAATG GGACTCCATT TAAGTTAACT TTAATAGTGC CATCAGGTTT CACTGACTGG
GCTACATTCT CATCAGCTGC CGCTGTCTCA ATAAGCCAGT TCGGTATACC TACAACATTA
TTAGCCTTGG ATACCTCAAC ATACTGGAGT ACAATATTCC CTAATGGTGA GTATGAAATG
GCTATGACAT GGATGACGTG GTCAAGGGGT TACGGTGACT TCAGTTTCCT AGCATCACCA
TGGTGGACTT TCCCAGCATT CAATCTCTCC AAGGCTTGGC CATTCCAGTG GCCTAATGGG
ACATGCACAC CAGTAACAGC ACCTAGCATA CCAGGCTTTA CTCCACCTAA TAGTACGATA
GTATGGTGTG TTAATTCAAC ATTCGGCTAC ATTAACTTAA CCAACTGGGG CGTAGTATTT
GCGGCCACTG TCCCAGGGAT GCCTCAGTAT GATGAGCTTC TGAAGGTATT ATTCGCCTGG
TATGAATACT ACATGCCAGT GATACCAAAC TTAACCCAGA ACATGCAGTT CAACTATAAT
CCAGCTGACT TTGATATTAT ATGGTGGATT AAAGGCTTAC CACCATCCTC ATGGTTACTC
TTTACACAGG GAGCATGGGG TGAAACACTA TCCGTAATGC TTTGGAATAT TGGATTCGGC
GCATTAGCAC CACCAGGTGT AGTACCACCG TTGGCGCAGG CTGCCGTCAA TGGTTCACTA
TGGAGAATTG ACCCGCAGTT AGCTGCATTC GCAGGATGGA GCCCAAGTAC AATGAACCTA
GAAGCCATAG CCTCATACTT CCATATACCG TATACTCCAG TGACTACTAC TTCAACTACT
ACTACCACTT CAACTACAAC TGTTACTTCA ACTGCCGTTG CTACTGTGAC TTCAACAGTC
ACAACCACTG CAGTTAGCAC TGTGACTAGC ACAGCAACAA CCACAGCAGT AAGCACAGTA
ACCGTGACCA AACCAGTGGT AAGCACAGCA TTAATAGCAG GAATAGTAAT CATAGTAGTA
GTTATTGCCA TTGTTGCAGC AATAATAGCA TTAAGAAGAA GATGA
|
|---|
| Protein sequence | MKNLNIHCNK CYAMGKNTPL TLVVAAVIAI SIAVVNIAYA ASNTVTIVTT EGTLIYTPGQ
PIWNPYAPNN FIGVVGTYMS LAFYNPLTAK FYPVLAENWT VEVLPNGSGI LTIYLRHNLY
WFNGSAVMPF TAWDVYAEFY IGVKVFSWYY PFMQPQYADE DIRVLNNYTI QFLFQEWSPQ
QIYYVLTTWI DTPYAVWKPI VDKLKTMSVS QAAAYGNNVT KFAPPYWGLS PYYVQLSTLS
ATYQTLLLEP MYFNGVPLLA SWDKIFPFND WSIYPKYVIW AVGGNTQAMT ALLARKVNLA
FIGLSLQQEA TINASGLGEY NGPNYATNGY TLNPNIYPFN IPQVRQAFCY IINRTAESLA
WGGLYAPDPY PVPVANFQPS IQSYPSSVWS IVTVHCTTNW TKAAQLLESA GLTYKNGQWY
LPNGTPFKLT LIVPSGFTDW ATFSSAAAVS ISQFGIPTTL LALDTSTYWS TIFPNGEYEM
AMTWMTWSRG YGDFSFLASP WWTFPAFNLS KAWPFQWPNG TCTPVTAPSI PGFTPPNSTI
VWCVNSTFGY INLTNWGVVF AATVPGMPQY DELLKVLFAW YEYYMPVIPN LTQNMQFNYN
PADFDIIWWI KGLPPSSWLL FTQGAWGETL SVMLWNIGFG ALAPPGVVPP LAQAAVNGSL
WRIDPQLAAF AGWSPSTMNL EAIASYFHIP YTPVTTTSTT TTTSTTTVTS TAVATVTSTV
TTTAVSTVTS TATTTAVSTV TVTKPVVSTA LIAGIVIIVV VIAIVAAIIA LRRR
|
|---|
| |