| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0168 |
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| Symbol | |
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| ID | 5709652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | + |
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| Start bp | 197753 |
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| End bp | 198592 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641274671 |
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| Product | exosome complex RNA-binding protein Rrp42 |
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| Protein accession | YP_001540007 |
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| Protein GI | 159040755 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2123] RNase PH-related exoribonuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00118576 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.188024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTT ACCCATTTGA AATAATACCA TCCCTCAGGA GGGATACCTT AAGGAGACTG
ATAAGCGAGG GTAAGAGACC TGATGACAGG CAGTTAATCA GTATGAGGGA CTTAACCATA
AGGGTTGGGG TTATTAAGAC CGCTGACGGC AGCGCCCTAG TTAACCTAGG CAATACTAAG
GTGATAGCAG GCATTAAGTT TGAGTTAGGT AAGCCATTTG AGGATACGCC TAATGAAGGT
AACCTAATAG TGAACCTGGA GACCCCACCA TTGGCTGCAC CAACCTTTGA ACCCGGTCCA
CCTGATGAGA ACGCCATTGA GATCGCCAGG ATCATTGATA GGGCGCTTAG GCACAGTAAT
TACATACCCT TAAGGGACTT AGTCATAATA CCAGGTAAGT CTGTTTACTC AATGTGGGTG
GACATATATG TCCTTAACCA TGACGGTAAC TTAATAGACT CCTCAATGCT AGCGGCTGTT
TCAGCCATTG CCAATGCGCA GGTACCAAGG GCTATTATTG ATGGTGAGAA CGTTAAACTA
GATAAGTCAA CTAAGATACC GTTAAACATT AATCCCCAGA ACATGCCGCT AACTGTAACA
TACTATAAGA TTGACAAGTA CCTAATAGTT GATCCAACCC TGGAGGAGGA GGTTATGAGT
GATGGTAGAT TCACCGTGGC TTCGGATGGT GAGAACATTG TTGCATTACA GAAGGGTGAG
GGCTACTTCA CACCTGAGGA GGTTGACTCA ATGATGAATA ATACGTTGAA TATTGTAAGG
GACCTTAAGG TTAAGGTACT TGAAATGGTT AAAACACCTG CTAATTCACT ATTGTTTTAA
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| Protein sequence | MSSYPFEIIP SLRRDTLRRL ISEGKRPDDR QLISMRDLTI RVGVIKTADG SALVNLGNTK
VIAGIKFELG KPFEDTPNEG NLIVNLETPP LAAPTFEPGP PDENAIEIAR IIDRALRHSN
YIPLRDLVII PGKSVYSMWV DIYVLNHDGN LIDSSMLAAV SAIANAQVPR AIIDGENVKL
DKSTKIPLNI NPQNMPLTVT YYKIDKYLIV DPTLEEEVMS DGRFTVASDG ENIVALQKGE
GYFTPEEVDS MMNNTLNIVR DLKVKVLEMV KTPANSLLF
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