| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0102 |
|---|
| Symbol | |
|---|
| ID | 5709656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 119658 |
|---|
| End bp | 120386 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641274606 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001539946 |
|---|
| Protein GI | 159040694 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2324] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAGT CCAGGATACT AATCGTGGTA TGGATCCTGG CCTACCTATA CATACCCTGC
CTAATCATTG GTAACACGGT GCAAATGAGT GGTGTTGTAG GCTTAGTTGT GGGTTTCATA
GCATCCCCCC TCTACTTAAT AATTATCTAC CTAGCACATT CAATAATGAA TATGGAGGCT
AGAAGGGCCT TTACATTTTT AGTGATTACA TTCCTTGTAT CCATGGCCTT TGAGTTACTG
GGCGTCAACT ACGGAATACC CTTCGGCAAG TATTACTACA CCCAGGGTCT TGGGCCCAAG
GTCTATGGAG TACCCATACT GATACCATTG CTTTGGTCGT CCCTGGGCTA CTTCACGCTG
ATTGCATACG GTGATTATGT ACTGTCTGCA TTGGGTATGG TGGTCCTTGA CGTAACCTTC
GATCCACTGC TTTCAGGACC CATTGGTCTA TGGCACTGGG TAACTAGGGG TCAGTTCTTT
GGGGTACCAT TAATCAACTT CCTTGGGTGG TTCGTGGTAT CAATAACATT CTACCTAATC
TACGCCCGTG TAATGAGGGT ATGGGGTTAT AAGCCATCTA TAATCGCCCT ACTGTTCTAC
GACCTATACG ACATAGACTG GGCGATCACT GATGCATTCT ACGGGTTAAT GCCTGTGGCC
TTGATCTCAA CTGTATTACT TATCATATTC AACACCATGG TGATACTGAG ACTACGTAGA
TGTGGATAG
|
|---|
| Protein sequence | MVKSRILIVV WILAYLYIPC LIIGNTVQMS GVVGLVVGFI ASPLYLIIIY LAHSIMNMEA
RRAFTFLVIT FLVSMAFELL GVNYGIPFGK YYYTQGLGPK VYGVPILIPL LWSSLGYFTL
IAYGDYVLSA LGMVVLDVTF DPLLSGPIGL WHWVTRGQFF GVPLINFLGW FVVSITFYLI
YARVMRVWGY KPSIIALLFY DLYDIDWAIT DAFYGLMPVA LISTVLLIIF NTMVILRLRR
CG
|
|---|
| |